5E8N

The structure of the TEIPP associated Trh4 peptide in complex with H-2D(b)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.286
  • R-Value Work: 0.239

Literature

Macromolecules
Sequence Display for 5E8N

Classification: IMMUNE SYSTEM

Total Structure Weight: 179582.05

Macromolecule Entities
Molecule Chains Length Organism Details
H-2 class I histocompatibility antigen, D-B alpha chain A, D, G, J 276 Mus musculus Gene Name(s): H2-D1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Beta-2-microglobulin B, E, H, K 99 Mus musculus Mutation: A85D
Gene Name(s): B2m
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ceramide synthase 5 C, F, I, L 9 Mus musculus EC#: 2.3.1.24 IUBMB
Fragment: UNP residues 379-387

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

G SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.286
  • R-Value Work: 0.239
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 92.51 α = 90.00
b = 124.25 β = 103.26
c = 99.29 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-10-14
  • Released Date: 2016-02-03
  • Deposition author(s): Hafstrand, I., Doorduijn, E., Duru, A.D., Buratto, J., Oliveira, C.C., Sandalova, T., van Hall, T., Achour, A.

Revision History

  • 2016-02-10
    Type: Database references
  • 2016-03-02
    Type: Database references