4N4I

Crystal structure of the Bromo-PWWP of the mouse zinc finger MYND-type containing 11 isoform alpha in complex with histone H3.3K36me3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 4N4I

Classification: TRANSCRIPTION

Total Structure Weight: 32429.38

Macromolecule Entities
Molecule Chains Length Organism Details
Zinc finger MYND domain-containing protein 11 A 252 Mus musculus Fragment: UNP residues 154-371
Mutation: D234A, E236A
Gene Name(s): Zmynd11
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Peptide from Histone H3.3 B 24 Homo sapiens Gene Name(s): H3F3A Gene View H3.3A H3F3 PP781 H3F3B Gene View H3.3B
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PEG
Query on PEG

A DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
M3L
Query on M3L
B L-PEPTIDE LINKING C9 H21 N2 O2 LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.199
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 64.01 α = 90.00
b = 64.01 β = 90.00
c = 122.98 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-10-08
  • Released Date: 2014-03-05
  • Deposition author(s): Li, Y., Ren, Y., Li, H.

Revision History

  • 2014-04-16
    Type: Database references