3ROO

Murine class I major histocompatibility complex H-2Kb in complex with immunodominant LCMV-derived gp34-41 peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.225

Literature

Macromolecules
Sequence Display for 3ROO

Classification: IMMUNE SYSTEM

Total Structure Weight: 89406.18

Macromolecule Entities
Molecule Chains Length Organism Details
Murine class I major histocompatibility complex H-2Kb A, C 275 Mus musculus Fragment: unp residues 22-296
Gene Name(s): H2-K1 H2-K
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Beta-2-microglobulin B, D 99 Mus musculus Fragment: unp residues 21-119
Gene Name(s): B2m
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Pre-glycoprotein polyprotein GP complex E, F 8 Lymphocytic choriomeningitis mammarenavirus Fragment: unp residues 34-41
Mutation: C8M
Gene Name(s): GPC GP-C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

B, C (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

B, C PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, D GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.225
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 88.45 α = 90.00
b = 92.59 β = 90.00
c = 128.83 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-04-26
  • Released Date: 2012-04-04
  • Deposition author(s): Madhurantakam, C., Duru, A.D., Leong, C., Sandalova, T., Webb, J.R., Achour, A.

Revision History

No revisions since initial release