1RK1

Mhc Class I Natural H-2Kb Heavy Chain Complexed With beta-2 Microglobulin and Herpes Simplex Virus Mutant Glycoprotein B Peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.208

Literature

Macromolecules
Sequence Display for 1RK1

Classification: IMMUNE SYSTEM

Total Structure Weight: 44924.34

Macromolecule Entities
Molecule Chains Length Organism Details
H-2 class I histocompatibility antigen, K-B alpha chain A 274 Mus musculus Fragment: extracellular domain
Gene Name(s): H2-K1 H2-K
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Beta-2-microglobulin B 99 Mus musculus Gene Name(s): B2m
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Glycoprotein B P 8 Human alphaherpesvirus 1 Mutation: S2E
Gene Name(s): gB UL27
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUL
Query on FUL

A BETA-L-FUCOSE
6-DEOXY-BETA-L-GALACTOSE (Synonym)
C6 H12 O5
SHZGCJCMOBCMKK-KGJVWPDLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.208
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 135.24 α = 90.00
b = 89.54 β = 90.00
c = 45.25 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-11-20
  • Released Date: 2004-12-14
  • Deposition author(s): Miley, M.J., Messaoudi, I., Nikolich-Zugich, J., Fremont, D.H.

Revision History

  • 2008-04-29
    Type: Version format compliance
  • 2011-07-13
    Type: Non-polymer description, Version format compliance