8X2K

a lipid receptor complex structure

• PDB DOI: https://doi.org/10.2210/pdb8X2K/pdb
• EM Map EMD-38015: EMDB EMDataResource

• Classification: MEMBRANE PROTEIN
• Organism(s): Homo sapiens
• Expression System: Spodoptera aff. frugiperda 1 BOLD-2017
• Mutation(s): No 


• Deposited: 2023-11-09 Released: 2024-04-03 
• Deposition Author(s): Geng, C., Yang, D., Jun, X.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

---

Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.03 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

a lipid receptor complex structure

Geng, C., Yang, D., Jun, X.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 5-mer - A1B1C1D1E1 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 169 kDa 
• Atom Count: 8,570 
• Modelled Residue Count: 1,111 
• Deposited Residue Count: 1,528 
• Unique protein chains: 5

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Soluble cytochrome b562,G-protein coupled receptor 3	A	466	Homo sapiens	Mutation(s): 0  Gene Names: cybC
UniProt & NIH Common Fund Data Resources
Find proteins for P0ABE7 (Escherichia coli) Explore P0ABE7  Go to UniProtKB:  P0ABE7
Find proteins for P46089 (Homo sapiens) Explore P46089  Go to UniProtKB:  P46089
PHAROS:  P46089 GTEx:  ENSG00000181773
UniProt Groups	P46089P0ABE7

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Isoform Gnas-2 of Guanine nucleotide-binding protein G(s) subunit alpha isoforms short	B	373	Homo sapiens	Mutation(s): 0  Gene Names: GNAS, GNAS1, GSP
UniProt & NIH Common Fund Data Resources
Find proteins for P63092-2 (Homo sapiens) Explore P63092-2  Go to UniProtKB:  P63092-2
GTEx:  ENSG00000087460

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1	C	357	Homo sapiens	Mutation(s): 0  Gene Names: GNB1
UniProt & NIH Common Fund Data Resources
Find proteins for P62873 (Homo sapiens) Explore P62873  Go to UniProtKB:  P62873
PHAROS:  P62873 GTEx:  ENSG00000078369

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2	D	71	Homo sapiens	Mutation(s): 0  Gene Names: GNG2
UniProt & NIH Common Fund Data Resources
Find proteins for P59768 (Homo sapiens) Explore P59768  Go to UniProtKB:  P59768
PHAROS:  P59768 GTEx:  ENSG00000186469

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
scfv16	E	261	Homo sapiens	Mutation(s): 0

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
5YM (Subject of Investigation/LOI)	F [auth A]	(Z)-N-(2-hydroxyethyl)octadec-9-enamide C20 H39 N O2 BOWVQLFMWHZBEF-KTKRTIGZSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.03 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-04-03 
Deposition Author(s): Geng, C., Yang, D., Jun, X.

---

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History  

• Version 1.0: 2024-04-03
  Type: Initial release