8RUC

ACTIVATED SPINACH RUBISCO COMPLEXED WITH 2-CARBOXYARABINITOL BISPHOSPHATE

Structural Biology Knowledgebase: 8RUC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Observed: 0.211

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 8RUC

Classification: LYASE (CARBON-CARBON)

Total Structure Weight: 271478.09

Macromolecule Entities
Molecule Chains Length Organism Details
RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE A, C, E, G 475 Spinacia oleracea EC#: 4.1.1.39 IUBMB
Mutation: K201X
Gene Name(s): rbcL
RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE I, J, K, L 123 Spinacia oleracea EC#: 4.1.1.39 IUBMB
Mutation: K2Q, T6I, Q7L, M9L, R11K, Q109E, V113I
Gene Name(s): RBCS

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CAP
Query on CAP

A, C, E, G 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
C6 H14 O13 P2
ITHCSGCUQDMYAI-ZMIZWQJLSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, C, E, G MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
KCX
Query on KCX
A, C, E, G L-PEPTIDE LINKING C7 H14 N2 O4 LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Observed: 0.211
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 157.20 α = 90.00
b = 157.20 β = 90.00
c = 201.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-02-22
  • Released Date: 1996-08-01
  • Deposition author(s): Andersson, I., Knight, S., Branden, C.-I.
  • Previous versions: 8RUB

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4