Download MendeleySynthesis of P-stereodefined morpholino dinucleoside-3',6'-thiophosphoramidates using unexpected activator.
Jastrzebska, K., Antonczyk, P., Dolot, R.To be published.
8R5V
Crystal structure of bovine pancreatic ribonuclease A in complex with [Sp-PS]-mU-dT dinucleotide
- PDB DOI: https://doi.org/10.2210/pdb8R5V/pdb
- Classification: HYDROLASE
- Organism(s): Bos taurus
- Mutation(s): No
- Deposited: 2023-11-17 Released: 2023-12-06
- Funding Organization(s): Polish National Science Centre
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.230
- R-Value Work: 0.164
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribonuclease pancreatic | 150 | Bos taurus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P61823 (Bos taurus) Explore P61823 Go to UniProtKB: P61823 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P61823 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| Y4I (Subject of Investigation/LOI) Query on Y4I | C [auth A] | 1-[(2~{R},4~{S},5~{R})-5-[[[(2~{R},6~{S})-2-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-6-(hydroxymethyl)morpholin-4-yl]-oxidanyl-phosphinothioyl]oxymethyl]-4-oxidanyl-oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione C19 H26 N5 O10 P S JMOYBKKBBMXKAB-OTRGKRLXSA-N |  | ||
| TF4 Query on TF4 | D [auth A], E [auth B] | DICHLORO-ACETIC ACID C2 H2 Cl2 O2 JXTHNDFMNIQAHM-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.230
- R-Value Work: 0.164
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 100.315 | α = 90 |
| b = 32.709 | β = 90.069 |
| c = 72.802 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| CrysalisPro | data reduction |
| Aimless | data scaling |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-12-06 Deposition Author(s): Dolot, R., Jastrzebska, K., Antonczyk, P.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Polish National Science Centre | Poland | 2021/43/D/ST4/02433 |
Revision History (Full details and data files)
- Version 1.0: 2023-12-06
Type: Initial release
