8GAP

Structure of LARP7 protein p65-telomerase RNA complex in telomerase


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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Literature

Structure of LARP7 Protein p65-telomerase RNA Complex in Telomerase Revealed by Cryo-EM and NMR.

Wang, Y.He, Y.Wang, Y.Yang, Y.Singh, M.Eichhorn, C.D.Cheng, X.Jiang, Y.X.Zhou, Z.H.Feigon, J.

(2023) J Mol Biol 435: 168044-168044

  • DOI: https://doi.org/10.1016/j.jmb.2023.168044
  • Primary Citation of Related Structures:  
    8GAP

  • PubMed Abstract: 

    La-related protein 7 (LARP7) are a family of RNA chaperones that protect the 3'-end of RNA and are components of specific ribonucleoprotein complexes (RNP). In Tetrahymena thermophila telomerase, LARP7 protein p65 together with telomerase reverse transcriptase (TERT) and telomerase RNA (TER) form the core RNP. p65 has four known domains-N-terminal domain (NTD), La motif (LaM), RNA recognition motif 1 (RRM1), and C-terminal xRRM2. To date, only the xRRM2 and LaM and their interactions with TER have been structurally characterized. Conformational dynamics leading to low resolution in cryo-EM density maps have limited our understanding of how full-length p65 specifically recognizes and remodels TER for telomerase assembly. Here, we combined focused classification of Tetrahymena telomerase cryo-EM maps with NMR spectroscopy to determine the structure of p65-TER. Three previously unknown helices are identified, one in the otherwise intrinsically disordered NTD that binds the La module, one that extends RRM1, and another preceding xRRM2, that stabilize p65-TER interactions. The extended La module (αN, LaM and RRM1) interacts with the four 3' terminal U nucleotides, while LaM and αN additionally interact with TER pseudoknot, and LaM with stem 1 and 5' end. Our results reveal the extensive p65-TER interactions that promote TER 3'-end protection, TER folding, and core RNP assembly and stabilization. The structure of full-length p65 with TER also sheds light on the biological roles of genuine La and LARP7 proteins as RNA chaperones and core RNP components.


  • Organizational Affiliation

    Department of Chemistry and Biochemistry, University of California Los Angeles, Los Angeles, CA 90095-1569, USA.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Telomerase reverse transcriptase1,117Tetrahymena thermophilaMutation(s): 0 
EC: 2.7.7.49
UniProt
Find proteins for O77448 (Tetrahymena thermophila (strain SB210))
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Go to UniProtKB:  O77448
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UniProt GroupO77448
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Telomerase holoenzyme Teb1 subunitB [auth D]701Tetrahymena thermophilaMutation(s): 0 
UniProt
Find proteins for D2CVN6 (Tetrahymena thermophila (strain SB210))
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupD2CVN6
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Telomerase holoenzyme Teb2 subunitC [auth E]269Tetrahymena thermophilaMutation(s): 0 
UniProt
Find proteins for A0A0U8TRG9 (Tetrahymena thermophila (strain SB210))
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UniProt GroupA0A0U8TRG9
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Telomerase holoenzyme Teb3 subunitD [auth F]121Tetrahymena thermophilaMutation(s): 0 
UniProt
Find proteins for A0A0U8UFF4 (Tetrahymena thermophila (strain SB210))
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UniProt GroupA0A0U8UFF4
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Telomerase associated protein p50E [auth G]422Tetrahymena thermophilaMutation(s): 0 
UniProt
Find proteins for D2CVN8 (Tetrahymena thermophila (strain SB210))
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UniProt GroupD2CVN8
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Telomerase La-related protein p65542Tetrahymena thermophilaMutation(s): 0 
UniProt
Find proteins for W7X6T2 (Tetrahymena thermophila (strain SB210))
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UniProt GroupW7X6T2
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Entity ID: 6
MoleculeChains LengthOrganismImage
telomere DNAF [auth C]30synthetic construct
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Entity ID: 7
MoleculeChains LengthOrganismImage
Telomerase RNAG [auth B]159Tetrahymena thermophila
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Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN (Subject of Investigation/LOI)
Query on ZN

Download Ideal Coordinates CCD File 
I [auth D]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35GM131901
National Science Foundation (NSF, United States)United StatesMCB2016540

Revision History  (Full details and data files)

  • Version 1.0: 2023-06-28
    Type: Initial release
  • Version 1.1: 2023-07-19
    Changes: Database references