8DIL

Crystal structure of putative nitroreductase from Salmonella enterica


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.228 
  • R-Value Observed: 0.230 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of putative nitroreductase from Salmonella enterica

Chang, C.Skarina, T.Mesa, N.Joachimiak, A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Putative NAD(P)H nitroreductase
A, B, C, D, E
A, B, C, D, E, F
183Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344Mutation(s): 0 
Gene Names: 
EC: 1
UniProt
Find proteins for A0A0H3NAL3 (Salmonella typhimurium (strain SL1344))
Explore A0A0H3NAL3 
Go to UniProtKB:  A0A0H3NAL3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0H3NAL3
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 5 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
FMN
Query on FMN

Download Ideal Coordinates CCD File 
CA [auth E]
G [auth A]
IA [auth F]
L [auth B]
Q [auth C]
CA [auth E],
G [auth A],
IA [auth F],
L [auth B],
Q [auth C],
X [auth D]
FLAVIN MONONUCLEOTIDE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
CIT
Query on CIT

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DA [auth E]
H [auth A]
JA [auth F]
M [auth B]
R [auth C]
DA [auth E],
H [auth A],
JA [auth F],
M [auth B],
R [auth C],
Y [auth D]
CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
PGE
Query on PGE

Download Ideal Coordinates CCD File 
EA [auth E],
I [auth A],
MA [auth F],
U [auth C],
Z [auth D]
TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
PEG
Query on PEG

Download Ideal Coordinates CCD File 
AA [auth D]
FA [auth E]
HA [auth E]
K [auth A]
KA [auth F]
AA [auth D],
FA [auth E],
HA [auth E],
K [auth A],
KA [auth F],
LA [auth F],
S [auth C],
T [auth C]
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
EDO
Query on EDO

Download Ideal Coordinates CCD File 
BA [auth D]
GA [auth E]
J [auth A]
N [auth B]
O [auth B]
BA [auth D],
GA [auth E],
J [auth A],
N [auth B],
O [auth B],
P [auth B],
V [auth C],
W [auth C]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 42.588α = 90
b = 72.719β = 93.94
c = 172.854γ = 90
Software Package:
Software NamePurpose
SBC-Collectdata collection
PHENIXrefinement
HKL-3000data scaling
PDB_EXTRACTdata extraction
HKL-3000data reduction
HKL-3000phasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2022-07-13
    Type: Initial release
  • Version 1.1: 2023-10-18
    Changes: Data collection, Refinement description