7Z0O

Structure of transcription factor UAF in complex with TBP and 35S rRNA promoter DNA


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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Literature

Mechanism of RNA polymerase I selection by transcription factor UAF.

Baudin, F.Murciano, B.Fung, H.K.H.Fromm, S.A.Mattei, S.Mahamid, J.Muller, C.W.

(2022) Sci Adv 8: eabn5725-eabn5725

  • DOI: https://doi.org/10.1126/sciadv.abn5725
  • Primary Citation of Related Structures:  
    7Z0O

  • PubMed Abstract: 

    Preribosomal RNA is selectively transcribed by RNA polymerase (Pol) I in eukaryotes. The yeast transcription factor upstream activating factor (UAF) represses Pol II transcription and mediates Pol I preinitiation complex (PIC) formation at the 35 S ribosomal RNA gene. To visualize the molecular intermediates toward PIC formation, we determined the structure of UAF in complex with native promoter DNA and transcription factor TATA-box-binding protein (TBP). We found that UAF recognizes DNA using a hexameric histone-like scaffold with markedly different interactions compared with the nucleosome and the histone-fold-rich transcription factor IID (TFIID). In parallel, UAF positions TBP for Core Factor binding, which leads to Pol I recruitment, while sequestering it from DNA and Pol II/III-specific transcription factors. Our work thus reveals the structural basis of RNA Pol selection by a transcription factor.


  • Organizational Affiliation

    Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H3
A, C
136Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: HHT1YBR010WYBR0201HHT2SIN2YNL031CN2749
UniProt
Find proteins for P61830 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP61830
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H4103Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: HHF1YBR009CYBR0122HHF2YNL030WN2752
UniProt
Find proteins for P02309 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
RNA polymerase I-specific transcription initiation factor RRN5364Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: RRN5YLR141WL3165L9606.3
UniProt
Find proteins for Q02983 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupQ02983
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
RNA polymerase I-specific transcription initiation factor RRN9366Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: RRN9YMR270CYM8156.12C
UniProt
Find proteins for P53437 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP53437
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
RNA polymerase I-specific transcription initiation factor RRN10145Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: RRN10YBL025WYBL0426
UniProt
Find proteins for P38204 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Upstream activation factor subunit UAF30228Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: UAF30YOR295W
UniProt
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
TATA-box-binding protein242Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: SPT15BTF1TBP1YER148W
UniProt
Find proteins for P13393 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 8
MoleculeChains LengthOrganismImage
Non-template DNAI [auth N]151Saccharomyces cerevisiae
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Entity ID: 9
MoleculeChains LengthOrganismImage
Template DNAJ [auth T]151Saccharomyces cerevisiae
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1.2

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
EIPOD fellowship under Marie Sklodowska-Curie Actions COFUNDGermany664726

Revision History  (Full details and data files)

  • Version 1.0: 2022-04-27
    Type: Initial release
  • Version 1.1: 2022-05-04
    Changes: Database references