Structural insights into allosteric effects of antiepileptic drug topiramate on CaV2.3 channel.
Gao, Y., Zhao, Y.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Voltage-dependent R-type calcium channel subunit alpha-1E | 2,313 | Homo sapiens | Mutation(s): 0  Gene Names: CACNA1E, CACH6, CACNL1A6 Membrane Entity: Yes  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q15878 (Homo sapiens) Explore Q15878  Go to UniProtKB:  Q15878 | |||||
PHAROS:  Q15878 GTEx:  ENSG00000198216  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q15878 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Voltage-dependent L-type calcium channel subunit beta-1 | 598 | Homo sapiens | Mutation(s): 0  Gene Names: CACNB1, CACNLB1 Membrane Entity: Yes  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q02641 (Homo sapiens) Explore Q02641  Go to UniProtKB:  Q02641 | |||||
PHAROS:  Q02641 GTEx:  ENSG00000067191  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q02641 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Voltage-dependent calcium channel subunit alpha-2/delta-1 | C [auth D] | 1,103 | Homo sapiens | Mutation(s): 0  Gene Names: CACNA2D1, CACNL2A, CCHL2A, MHS3 Membrane Entity: Yes  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P54289 (Homo sapiens) Explore P54289  Go to UniProtKB:  P54289 | |||||
PHAROS:  P54289 GTEx:  ENSG00000153956  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P54289 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 4 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | D [auth E], E [auth C] | 3 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G15407YE GlyCosmos:  G15407YE GlyGen:  G15407YE |
Ligands 6 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
3PE Query on 3PE | J [auth A], K [auth A] | 1,2-Distearoyl-sn-glycerophosphoethanolamine C41 H82 N O8 P LVNGJLRDBYCPGB-LDLOPFEMSA-N | |||
Y01 Query on Y01 | G [auth A] L [auth A] N [auth A] P [auth A] Q [auth A] | CHOLESTEROL HEMISUCCINATE C31 H50 O4 WLNARFZDISHUGS-MIXBDBMTSA-N | |||
TOR (Subject of Investigation/LOI) Query on TOR | V [auth A] | [(3aS,5aR,8aR,8bS)-2,2,7,7-tetramethyltetrahydro-3aH-bis[1,3]dioxolo[4,5-b:4',5'-d]pyran-3a-yl]methyl sulfamate C12 H21 N O8 S KJADKKWYZYXHBB-XBWDGYHZSA-N | |||
R16 Query on R16 | H [auth A] I [auth A] M [auth A] O [auth A] X [auth A] | HEXADECANE C16 H34 DCAYPVUWAIABOU-UHFFFAOYSA-N | |||
NAG Query on NAG | AA [auth D] BA [auth D] CA [auth D] DA [auth D] EA [auth D] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
CA Query on CA | U [auth A], Z [auth D] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Task | Software Package | Version |
---|---|---|
MODEL REFINEMENT | Coot | 0.9.6.2-pre |
RECONSTRUCTION | cryoSPARC | 3.3.1 |
Funding Organization | Location | Grant Number |
---|---|---|
Chinese Academy of Sciences | China | -- |