7OW7

EIF6-bound large subunit of the human ribosome

• PDB DOI: https://doi.org/10.2210/pdb7OW7/pdb
• EM Map EMD-13094: EMDB EMDataResource
• NAKB: 7OW7

• Classification: TRANSLATION
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2021-06-16 Released: 2022-10-05 
• Deposition Author(s): Faille, A., Warren, A.J.
• Funding Organization(s): Medical Research Council (MRC, United Kingdom)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.40 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structure of human EIF6-bound large ribosomal subunit

Faille, A., Warren, A.J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 40-mer - A1B1C1D1E1F1G1H1I1J1K1L1M1N1O1P1Q1R1S1T1U1V1W1X1Y1Z1a1b1c1d1e1f1g1h1i1j1k1l1m1n1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 2,579.12 kDa 
• Atom Count: 137,413 
• Modelled Residue Count: 9,925 
• Deposited Residue Count: 12,660 
• Unique protein chains: 40
• Unique nucleic acid chains: 3

Macromolecules

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L8	D	257	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62917 (Homo sapiens) Explore P62917  Go to UniProtKB:  P62917
GTEx:  ENSG00000161016

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L3 isoform a	E	430	Homo sapiens	Mutation(s): 0

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L4	F	427	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P36578 (Homo sapiens) Explore P36578  Go to UniProtKB:  P36578
PHAROS:  P36578 GTEx:  ENSG00000174444

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L5	G	297	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46777 (Homo sapiens) Explore P46777  Go to UniProtKB:  P46777
PHAROS:  P46777 GTEx:  ENSG00000122406

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L6	H	288	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q02878 (Homo sapiens) Explore Q02878  Go to UniProtKB:  Q02878
PHAROS:  Q02878 GTEx:  ENSG00000089009

Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L7	I [auth m]	248	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P18124 (Homo sapiens) Explore P18124  Go to UniProtKB:  P18124
PHAROS:  P18124 GTEx:  ENSG00000147604

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L7a	J [auth n]	266	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62424 (Homo sapiens) Explore P62424  Go to UniProtKB:  P62424
PHAROS:  P62424 GTEx:  ENSG00000148303

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L9	K [auth o]	190	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P32969 (Homo sapiens) Explore P32969  Go to UniProtKB:  P32969
PHAROS:  P32969 GTEx:  ENSG00000163682

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L10-like	L [auth p]	214	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q96L21 (Homo sapiens) Explore Q96L21  Go to UniProtKB:  Q96L21
PHAROS:  Q96L21 GTEx:  ENSG00000165496

Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L11	M [auth q]	178	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62913 (Homo sapiens) Explore P62913  Go to UniProtKB:  P62913
PHAROS:  P62913 GTEx:  ENSG00000142676

Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L13	N [auth r]	211	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P26373 (Homo sapiens) Explore P26373  Go to UniProtKB:  P26373
PHAROS:  P26373 GTEx:  ENSG00000167526

Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L14	O [auth s]	220	Homo sapiens	Mutation(s): 0
UniProt
Find proteins for Q6IPH7 (Homo sapiens) Explore Q6IPH7  Go to UniProtKB:  Q6IPH7

Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L15	P [auth t]	204	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61313 (Homo sapiens) Explore P61313  Go to UniProtKB:  P61313
PHAROS:  P61313 GTEx:  ENSG00000174748

Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L13a	Q [auth I]	203	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P40429 (Homo sapiens) Explore P40429  Go to UniProtKB:  P40429
PHAROS:  P40429 GTEx:  ENSG00000142541

Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L17	R [auth J]	184	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P18621 (Homo sapiens) Explore P18621  Go to UniProtKB:  P18621
PHAROS:  P18621 GTEx:  ENSG00000265681

Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L18	S [auth K]	188	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q07020 (Homo sapiens) Explore Q07020  Go to UniProtKB:  Q07020
PHAROS:  Q07020 GTEx:  ENSG00000063177

Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L19	T [auth L]	196	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P84098 (Homo sapiens) Explore P84098  Go to UniProtKB:  P84098
PHAROS:  P84098 GTEx:  ENSG00000108298

Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L18a	U [auth M]	176	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q02543 (Homo sapiens) Explore Q02543  Go to UniProtKB:  Q02543
GTEx:  ENSG00000105640

Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L21	V [auth N]	160	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46778 (Homo sapiens) Explore P46778  Go to UniProtKB:  P46778
PHAROS:  P46778 GTEx:  ENSG00000122026

Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L23a	W [auth R]	156	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62750 (Homo sapiens) Explore P62750  Go to UniProtKB:  P62750
PHAROS:  P62750 GTEx:  ENSG00000198242

Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L26	X [auth S]	145	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61254 (Homo sapiens) Explore P61254  Go to UniProtKB:  P61254
PHAROS:  P61254 GTEx:  ENSG00000161970

Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L27	Y [auth T]	136	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61353 (Homo sapiens) Explore P61353  Go to UniProtKB:  P61353
PHAROS:  P61353 GTEx:  ENSG00000131469

Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L27a	Z [auth U]	148	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46776 (Homo sapiens) Explore P46776  Go to UniProtKB:  P46776
PHAROS:  P46776 GTEx:  ENSG00000166441

Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L29	AA [auth V]	159	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P47914 (Homo sapiens) Explore P47914  Go to UniProtKB:  P47914
GTEx:  ENSG00000162244

Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L30	BA [auth W]	115	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62888 (Homo sapiens) Explore P62888  Go to UniProtKB:  P62888
PHAROS:  P62888 GTEx:  ENSG00000156482

Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L31	CA [auth X]	125	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62899 (Homo sapiens) Explore P62899  Go to UniProtKB:  P62899
PHAROS:  P62899 GTEx:  ENSG00000071082

Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L32	DA [auth Y]	135	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62910 (Homo sapiens) Explore P62910  Go to UniProtKB:  P62910
PHAROS:  P62910 GTEx:  ENSG00000144713

Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L35a	EA [auth Z]	110	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P18077 (Homo sapiens) Explore P18077  Go to UniProtKB:  P18077
PHAROS:  P18077 GTEx:  ENSG00000182899

Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L34	FA [auth a]	117	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P49207 (Homo sapiens) Explore P49207  Go to UniProtKB:  P49207
PHAROS:  P49207 GTEx:  ENSG00000109475

Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L35	GA [auth b]	123	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P42766 (Homo sapiens) Explore P42766  Go to UniProtKB:  P42766
PHAROS:  P42766 GTEx:  ENSG00000136942

Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L36	HA [auth c]	105	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y3U8 (Homo sapiens) Explore Q9Y3U8  Go to UniProtKB:  Q9Y3U8
PHAROS:  Q9Y3U8 GTEx:  ENSG00000130255

Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L37	IA [auth d]	97	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61927 (Homo sapiens) Explore P61927  Go to UniProtKB:  P61927
PHAROS:  P61927 GTEx:  ENSG00000145592

Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L38	JA [auth e]	70	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P63173 (Homo sapiens) Explore P63173  Go to UniProtKB:  P63173
PHAROS:  P63173 GTEx:  ENSG00000172809

Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L39	KA [auth f]	157	Homo sapiens	Mutation(s): 0

Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L36a	LA [auth i]	106	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P83881 (Homo sapiens) Explore P83881  Go to UniProtKB:  P83881
PHAROS:  P83881 GTEx:  ENSG00000241343

Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L37a	MA [auth j]	92	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61513 (Homo sapiens) Explore P61513  Go to UniProtKB:  P61513
PHAROS:  P61513 GTEx:  ENSG00000197756

Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L28	NA [auth k]	137	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46779 (Homo sapiens) Explore P46779  Go to UniProtKB:  P46779
PHAROS:  P46779 GTEx:  ENSG00000108107

Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
Eukaryotic translation initiation factor 6	OA [auth P]	245	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P56537 (Homo sapiens) Explore P56537  Go to UniProtKB:  P56537
PHAROS:  P56537 GTEx:  ENSG00000242372

Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L23	PA [auth Q]	140	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62829 (Homo sapiens) Explore P62829  Go to UniProtKB:  P62829
PHAROS:  P62829 GTEx:  ENSG00000125691

Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L24	QA [auth u]	157	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P83731 (Homo sapiens) Explore P83731  Go to UniProtKB:  P83731
PHAROS:  P83731 GTEx:  ENSG00000114391

Entity ID: 1
Molecule	Chains	Length	Organism	Image
28S rRNA	A	5,070	Homo sapiens

Entity ID: 2
Molecule	Chains	Length	Organism	Image
5S rRNA	B	121	Homo sapiens

Entity ID: 3
Molecule	Chains	Length	Organism	Image
5.8S ribosomal RNA	C	157	Homo sapiens

Small Molecules

Ligands 5 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
BR	SO [auth G]	BROMIDE ION Br CPELXLSAUQHCOX-UHFFFAOYSA-M
ZN	FP [auth a], GP [auth d], IP [auth i], KP [auth j], SA [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N
K	AJ [auth A], AK [auth A], AL [auth A], AM [auth A], AN [auth A], AO [auth A], BJ [auth A], BK [auth A], BL [auth A], BM [auth A], BN [auth A], BO [auth A], BP [auth N], CJ [auth A], CK [auth A], CL [auth A], CM [auth A], CN [auth A], CP [auth V], DJ [auth A], DK [auth A], DL [auth A], DM [auth A], DN [auth A], DP [auth Y], EJ [auth A], EK [auth A], EL [auth A], EM [auth A], EN [auth A], EP [auth Z], FJ [auth A], FK [auth A], FL [auth A], FM [auth A], FN [auth A], GJ [auth A], GK [auth A], GL [auth A], GM [auth A], GN [auth A], HJ [auth A], HK [auth A], HL [auth A], HM [auth A], HN [auth A], HP [auth f], IJ [auth A], IK [auth A], IL [auth A], IM [auth A], IN [auth A], IO [auth B], JJ [auth A], JK [auth A], JL [auth A], JM [auth A], JN [auth A], JP [auth i], KJ [auth A], KK [auth A], KL [auth A], KM [auth A], KN [auth A], LJ [auth A], LK [auth A], LL [auth A], LM [auth A], LN [auth A], MJ [auth A], MK [auth A], ML [auth A], MM [auth A], MN [auth A], NJ [auth A], NK [auth A], NL [auth A], NM [auth A], NN [auth A], OJ [auth A], OK [auth A], OL [auth A], OM [auth A], ON [auth A], PJ [auth A], PK [auth A], PL [auth A], PM [auth A], PN [auth A], PO [auth D], QJ [auth A], QK [auth A], QL [auth A], QM [auth A], QN [auth A], QO [auth D], RJ [auth A], RK [auth A], RL [auth A], RM [auth A], RN [auth A], RO [auth D], SJ [auth A], SK [auth A], SL [auth A], SM [auth A], SN [auth A], TI [auth A], TJ [auth A], TK [auth A], TL [auth A], TM [auth A], TN [auth A], TO [auth o], UI [auth A], UJ [auth A], UK [auth A], UL [auth A], UM [auth A], UN [auth A], UO [auth p], VI [auth A], VJ [auth A], VK [auth A], VL [auth A], VM [auth A], VN [auth A], VO [auth t], WI [auth A], WJ [auth A], WK [auth A], WL [auth A], WM [auth A], WN [auth A], XI [auth A], XJ [auth A], XK [auth A], XL [auth A], XM [auth A], XN [auth A], YI [auth A], YJ [auth A], YK [auth A], YL [auth A], YM [auth A], YN [auth A], YO [auth J], ZI [auth A], ZJ [auth A], ZK [auth A], ZL [auth A], ZM [auth A], ZN [auth A]	POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N
MG	AB [auth A], AC [auth A], AD [auth A], AE [auth A], AF [auth A], AG [auth A], AH [auth A], AI [auth A], AP [auth L], BB [auth A], BC [auth A], BD [auth A], BE [auth A], BF [auth A], BG [auth A], BH [auth A], BI [auth A], CB [auth A], CC [auth A], CD [auth A], CE [auth A], CF [auth A], CG [auth A], CH [auth A], CI [auth A], DB [auth A], DC [auth A], DD [auth A], DE [auth A], DF [auth A], DG [auth A], DH [auth A], DI [auth A], EB [auth A], EC [auth A], ED [auth A], EE [auth A], EF [auth A], EG [auth A], EH [auth A], EI [auth A], FB [auth A], FC [auth A], FD [auth A], FE [auth A], FF [auth A], FG [auth A], FH [auth A], FI [auth A], FO [auth B], GB [auth A], GC [auth A], GD [auth A], GE [auth A], GF [auth A], GG [auth A], GH [auth A], GI [auth A], GO [auth B], HB [auth A], HC [auth A], HD [auth A], HE [auth A], HF [auth A], HG [auth A], HH [auth A], HI [auth A], HO [auth B], IB [auth A], IC [auth A], ID [auth A], IE [auth A], IF [auth A], IG [auth A], IH [auth A], II [auth A], JB [auth A], JC [auth A], JD [auth A], JE [auth A], JF [auth A], JG [auth A], JH [auth A], JI [auth A], JO [auth C], KB [auth A], KC [auth A], KD [auth A], KE [auth A], KF [auth A], KG [auth A], KH [auth A], KI [auth A], KO [auth C], LB [auth A], LC [auth A], LD [auth A], LE [auth A], LF [auth A], LG [auth A], LH [auth A], LI [auth A], LO [auth C], LP [auth Q], MB [auth A], MC [auth A], MD [auth A], ME [auth A], MF [auth A], MG [auth A], MH [auth A], MI [auth A], MO [auth C], MP [auth Q], NB [auth A], NC [auth A], ND [auth A], NE [auth A], NF [auth A], NG [auth A], NH [auth A], NI [auth A], NO [auth C], OB [auth A], OC [auth A], OD [auth A], OE [auth A], OF [auth A], OG [auth A], OH [auth A], OI [auth A], OO [auth C], PB [auth A], PC [auth A], PD [auth A], PE [auth A], PF [auth A], PG [auth A], PH [auth A], PI [auth A], QB [auth A], QC [auth A], QD [auth A], QE [auth A], QF [auth A], QG [auth A], QH [auth A], QI [auth A], RA [auth A], RB [auth A], RC [auth A], RD [auth A], RE [auth A], RF [auth A], RG [auth A], RH [auth A], RI [auth A], SB [auth A], SC [auth A], SD [auth A], SE [auth A], SF [auth A], SG [auth A], SH [auth A], SI [auth A], TA [auth A], TB [auth A], TC [auth A], TD [auth A], TE [auth A], TF [auth A], TG [auth A], TH [auth A], UA [auth A], UB [auth A], UC [auth A], UD [auth A], UE [auth A], UF [auth A], UG [auth A], UH [auth A], VA [auth A], VB [auth A], VC [auth A], VD [auth A], VE [auth A], VF [auth A], VG [auth A], VH [auth A], WA [auth A], WB [auth A], WC [auth A], WD [auth A], WE [auth A], WF [auth A], WG [auth A], WH [auth A], XA [auth A], XB [auth A], XC [auth A], XD [auth A], XE [auth A], XF [auth A], XG [auth A], XH [auth A], XO [auth J], YA [auth A], YB [auth A], YC [auth A], YD [auth A], YE [auth A], YF [auth A], YG [auth A], YH [auth A], ZA [auth A], ZB [auth A], ZC [auth A], ZD [auth A], ZE [auth A], ZF [auth A], ZG [auth A], ZH [auth A], ZO [auth L]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N
NA	CO [auth A], DO [auth A], EO [auth A], WO [auth t]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.40 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-10-05 
Deposition Author(s): Faille, A., Warren, A.J.

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Funding Organization	Location	Grant Number
Medical Research Council (MRC, United Kingdom)	United Kingdom	SBAG/159

Revision History  

• Version 1.0: 2022-10-05
  Type: Initial release