Structure of the Smurf2 HECT Domain with a High Affinity Ubiquitin Variant (UbV)
Chowdhury, A., Singer, A.U., Ogunjimi, A.A., Teyra, J., Chung, J., Wrana, J.L., Zhang, W., Sicheri, F., Sachdev, S.S.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
E3 ubiquitin-protein ligase SMURF2 | 387 | Homo sapiens | Mutation(s): 0  Gene Names: SMURF2 EC: 2.3.2.26 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9HAU4 (Homo sapiens) Explore Q9HAU4  Go to UniProtKB:  Q9HAU4 | |||||
PHAROS:  Q9HAU4 GTEx:  ENSG00000108854  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9HAU4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ubiquitin variant | 98 | Homo sapiens | Mutation(s): 9  Gene Names: UBA52, UBCEP2 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P62987 (Homo sapiens) Explore P62987  Go to UniProtKB:  P62987 | |||||
PHAROS:  P62987 GTEx:  ENSG00000221983  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P62987 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
DTT Query on DTT | M [auth A] | 2,3-DIHYDROXY-1,4-DITHIOBUTANE C4 H10 O2 S2 VHJLVAABSRFDPM-IMJSIDKUSA-N | |||
SO4 Query on SO4 | C [auth A], D [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
EDO Query on EDO | N [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
CL Query on CL | G [auth A] H [auth A] I [auth A] J [auth A] K [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
NA Query on NA | E [auth A], F [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 201.53 | α = 90 |
b = 72.068 | β = 94.607 |
c = 48.813 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
Aimless | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Ontario Research Fund | Canada | 72056614 |