7LUY

Crystal Structure of guanylate kinase from Bartonella henselae str. Houston-1

PDB DOI: https://doi.org/10.2210/pdb7LUY/pdb

Classification: TRANSFERASE
Organism(s): Bartonella henselae str. Houston-1
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-02-23 Released: 2021-03-17
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.253
R-Value Work: 0.198
R-Value Observed: 0.200

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of guanylate kinase from Bartonella henselae str. Houston-1

Abendroth, J., Dranow, D.M., Sankaran, B., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.

To be published.

Macromolecule Content

Total Structure Weight: 171.05 kDa
Atom Count: 9,673
Modelled Residue Count: 1,208
Deposited Residue Count: 1,458
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanylate kinase	A, B, C, D, E A, B, C, D, E, F	243	Bartonella henselae str. Houston-1	Mutation(s): 0 Gene Names: gmk, BH05390 EC: 2.7.4.8
UniProt
Find proteins for Q6G439 (Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1)) Explore Q6G439 Go to UniProtKB: Q6G439
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q6G439
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain N [auth C] SDF format, chain G [auth A] SDF format, chain H [auth A] SDF format, chain J [auth A] SDF format, chain K [auth B] SDF format, chain O [auth D] SDF format, chain P [auth D] SDF format, chain S [auth E] SDF format, chain T [auth E] SDF format, chain Y [auth F] MOL2 format, chain N [auth C] MOL2 format, chain G [auth A] MOL2 format, chain H [auth A] MOL2 format, chain J [auth A] MOL2 format, chain K [auth B] MOL2 format, chain O [auth D] MOL2 format, chain P [auth D] MOL2 format, chain S [auth E] MOL2 format, chain T [auth E] MOL2 format, chain Y [auth F]	G [auth A] H [auth A] J [auth A] K [auth B] N [auth C] G [auth A], H [auth A], J [auth A], K [auth B], N [auth C], O [auth D], P [auth D], S [auth E], T [auth E], Y [auth F]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain G [auth A] Focus chain H [auth A] Focus chain J [auth A] Focus chain K [auth B] Focus chain N [auth C] Focus chain O [auth D] Focus chain P [auth D] Focus chain S [auth E] Focus chain T [auth E] Focus chain Y [auth F] Interactions & Density Focus chain G [auth A] Focus chain H [auth A] Focus chain J [auth A] Focus chain K [auth B] Focus chain N [auth C] Focus chain O [auth D] Focus chain P [auth D] Focus chain S [auth E] Focus chain T [auth E] Focus chain Y [auth F]
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain M [auth B] SDF format, chain I [auth A] SDF format, chain L [auth B] SDF format, chain Q [auth D] SDF format, chain R [auth D] SDF format, chain U [auth E] SDF format, chain V [auth E] SDF format, chain W [auth E] SDF format, chain X [auth E] MOL2 format, chain M [auth B] MOL2 format, chain I [auth A] MOL2 format, chain L [auth B] MOL2 format, chain Q [auth D] MOL2 format, chain R [auth D] MOL2 format, chain U [auth E] MOL2 format, chain V [auth E] MOL2 format, chain W [auth E] MOL2 format, chain X [auth E]	I [auth A] L [auth B] M [auth B] Q [auth D] R [auth D] I [auth A], L [auth B], M [auth B], Q [auth D], R [auth D], U [auth E], V [auth E], W [auth E], X [auth E]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain I [auth A] Focus chain L [auth B] Focus chain M [auth B] Focus chain Q [auth D] Focus chain R [auth D] Focus chain U [auth E] Focus chain V [auth E] Focus chain W [auth E] Focus chain X [auth E] Interactions & Density Focus chain I [auth A] Focus chain L [auth B] Focus chain M [auth B] Focus chain Q [auth D] Focus chain R [auth D] Focus chain U [auth E] Focus chain V [auth E] Focus chain W [auth E] Focus chain X [auth E]