7ENN

The structure of ALC1 bound to the nucleosome


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural basis of ALC1/CHD1L autoinhibition and the mechanism of activation by the nucleosome.

Wang, L.Chen, K.Chen, Z.

(2021) Nat Commun 12: 4057-4057

  • DOI: https://doi.org/10.1038/s41467-021-24320-4
  • Primary Citation of Related Structures:  
    7ENN, 7EPU

  • PubMed Abstract: 

    Chromatin remodeler ALC1 (amplification in liver cancer 1) is crucial for repairing damaged DNA. It is autoinhibited and activated by nucleosomal epitopes. However, the mechanisms by which ALC1 is regulated remain unclear. Here we report the crystal structure of human ALC1 and the cryoEM structure bound to the nucleosome. The structure shows the macro domain of ALC1 binds to lobe 2 of the ATPase motor, sequestering two elements for nucleosome recognition, explaining the autoinhibition mechanism of the enzyme. The H4 tail competes with the macro domain for lobe 2-binding, explaining the requirement for this nucleosomal epitope for ALC1 activation. A dual-arginine-anchor motif of ALC1 recognizes the acidic pocket of the nucleosome, which is critical for chromatin remodeling in vitro. Together, our findings illustrate the structures of ALC1 and shed light on its regulation mechanisms, paving the way for the discovery of drugs targeting ALC1 for the treatment of cancer.


  • Organizational Affiliation

    Key Laboratory for Protein Sciences of Ministry of Education, School of Life Science, Tsinghua University, 100084, Beijing, P.R. China.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Chromodomain-helicase-DNA-binding protein 1-likeA [auth K]897Homo sapiensMutation(s): 1 
Gene Names: CHD1LALC1
EC: 3.6.4.12
UniProt & NIH Common Fund Data Resources
Find proteins for Q86WJ1 (Homo sapiens)
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Go to UniProtKB:  Q86WJ1
PHAROS:  Q86WJ1
GTEx:  ENSG00000131778 
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UniProt GroupQ86WJ1
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H3.2B [auth A],
F [auth E]
135Xenopus laevisMutation(s): 0 
UniProt
Find proteins for P84233 (Xenopus laevis)
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H4C [auth L],
G [auth F]
102Xenopus laevisMutation(s): 0 
UniProt
Find proteins for P62799 (Xenopus laevis)
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H2A type 1D [auth C],
H [auth G]
129Xenopus laevisMutation(s): 0 
UniProt
Find proteins for P06897 (Xenopus laevis)
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UniProt GroupP06897
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H2B 1.1E [auth D],
I [auth H]
122Xenopus laevisMutation(s): 0 
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Find proteins for P02281 (Xenopus laevis)
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Entity ID: 6
MoleculeChains LengthOrganismImage
DNA (167-MER)J [auth I]167synthetic construct
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Entity ID: 7
MoleculeChains LengthOrganismImage
DNA (167-MER)K [auth J]167synthetic construct
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-07-14
    Type: Initial release