Download MendeleyThe crystal structure of the 2009 H1N1 PA endonuclease mutant I38T in complex with SJ000986213
Cuypers, M.G., Slavish, P.J., Rankovic, Z., White, S.W.To be published.
6VLL
The crystal structure of the 2009/H1N1/California PA endonuclease mutant I38T in complex with SJ000986213
- PDB DOI: https://doi.org/10.2210/pdb6VLL/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Influenza A virus (A/Luxembourg/43/2009(H1N1))
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2020-01-24 Released: 2021-02-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.87 Å
- R-Value Free: 0.284
- R-Value Work: 0.235
- R-Value Observed: 0.239
wwPDB Validation 3D Report Full Report
Currently 6VLL does not have a validation slider image.
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Polymerase acidic protein | 197 | Influenza A virus (A/Luxembourg/43/2009(H1N1)) | Mutation(s): 1 Gene Names: PA |  | |
UniProt | |||||
Find proteins for C6H0Y9 (Influenza A virus) Explore C6H0Y9 Go to UniProtKB: C6H0Y9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | C6H0Y9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| R3J (Subject of Investigation/LOI) Query on R3J | B [auth A] | benzyl [2-(5-hydroxy-4-{[2-(2-methoxypyridin-4-yl)ethyl]carbamoyl}-6-oxo-1,6-dihydropyrimidin-2-yl)propan-2-yl]carbamate C24 H27 N5 O6 FTJIBWRYBXLDQU-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | E [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| MN Query on MN | C [auth A], D [auth A] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.87 Å
- R-Value Free: 0.284
- R-Value Work: 0.235
- R-Value Observed: 0.239
- Space Group: I 4 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 90.693 | α = 90 |
| b = 90.693 | β = 90 |
| c = 132.456 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| Aimless | data scaling |
| MOLREP | phasing |
Structure Validation
Currently 6VLL does not have a validation slider image.
Entry History
Deposition Data
- Released Date: 2021-02-24 Deposition Author(s): Cuypers, M.G., Slavish, P.J., Rankovic, Z., White, S.W.
Revision History (Full details and data files)
- Version 1.0: 2021-02-24
Type: Initial release - Version 1.1: 2023-10-11
Changes: Data collection, Database references, Refinement description
