6V6T

Solution structure of delta-theraphotoxin-Hm1b from Heteroscodra maculata


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 30 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy and with best stereochemical properties 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

A selective Na V 1.1 activator with potential for treatment of Dravet syndrome epilepsy.

Chow, C.Y.Chin, Y.K.Y.Ma, L.Undheim, E.A.B.Herzig, V.King, G.F.

(2020) Biochem Pharmacol 181: 113991-113991

  • DOI: https://doi.org/10.1016/j.bcp.2020.113991
  • Primary Citation of Related Structures:  
    6V6T

  • PubMed Abstract: 

    Dravet syndrome (DS) is a catastrophic epileptic encephalopathy characterised by childhood-onset polymorphic seizures, multiple neuropsychiatric comorbidities, and increased risk of sudden death. Heterozygous loss-of-function mutations in one allele of SCN1A, the gene encoding the voltage-gated sodium channel 1.1 (Na V 1.1), lead to DS. Na V 1.1 is primarily found in the axon initial segment of fast-spiking GABAergic inhibitory interneurons in the brain, and the principle mechanism proposed to underlie seizure genesis in DS is loss of inhibitory input due to dysfunctional firing of GABAergic interneurons. We hypothesised that DS symptoms could be ameliorated by a drug that activates the reduced population of functional Na V 1.1 channels in DS interneurons. We recently identified two homologous disulfide-rich spider-venom peptides (Hm1a and Hm1b) that selectively potentiate Na V 1.1, and showed that selective activation of Na V 1.1 by Hm1a restores the function of inhibitory interneurons in a mouse model of DS. Here we produced recombinant Hm1b (rHm1b) using an E. coli periplasmic expression system, and examined its selectivity against a panel of human Na V subtypes using whole-cell patch-clamp recordings. rHm1b is a potent and highly selective agonist of Na V 1.1 and Na V 1.3 (EC 50 ~12 nM for both). rHm1b is a gating modifier that shifts the voltage dependence of channel activation and inactivation to hyperpolarised and depolarised potentials respectively, presumably by interacting with the channel's voltage-sensor domains. Like Hm1a, the structure of rHm1b determined by using NMR revealed a classical inhibitor cystine knot (ICK) motif. However, we show that rHm1b is an order of magnitude more stable than Hm1a in human cerebrospinal fluid. Overall, our data suggest that rHm1b is an exciting lead for a precision therapeutic targeted against DS.


  • Organizational Affiliation

    Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, Australia.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Delta-theraphotoxin-Hm1b35Heteroscodra maculataMutation(s): 0 
UniProt
Find proteins for P0DOC5 (Heteroscodra maculata)
Explore P0DOC5 
Go to UniProtKB:  P0DOC5
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UniProt GroupP0DOC5
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 30 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy and with best stereochemical properties 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-05-13
    Type: Initial release
  • Version 1.1: 2020-09-30
    Changes: Database references
  • Version 1.2: 2020-10-28
    Changes: Database references
  • Version 1.3: 2023-06-14
    Changes: Advisory, Database references, Other