Odorant-binding site in visual opsin
Morizumi, T., Kuroi, K., Eger, B.T., Ou, W.L., Van Eps, N., Tsukamoto, H., Furutani, Y., Ernst, O.P.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Rhodopsin | 348 | Bos taurus | Mutation(s): 0  Membrane Entity: Yes  | ||
UniProt | |||||
Find proteins for P02699 (Bos taurus) Explore P02699  Go to UniProtKB:  P02699 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P02699 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
G alpha CT2 peptide | 11 | Bos taurus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for P04696 (Bos taurus) Explore P04696  Go to UniProtKB:  P04696 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04696 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | C | 4 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G31886NL GlyCosmos:  G31886NL GlyGen:  G31886NL |
Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
BOG Query on BOG | D [auth A] | octyl beta-D-glucopyranoside C14 H28 O6 HEGSGKPQLMEBJL-RKQHYHRCSA-N | |||
PLM Query on PLM | E [auth A] | PALMITIC ACID C16 H32 O2 IPCSVZSSVZVIGE-UHFFFAOYSA-N | |||
64Z (Subject of Investigation/LOI) Query on 64Z | F [auth A] | Geraniol C10 H18 O GLZPCOQZEFWAFX-JXMROGBWSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 243.919 | α = 90 |
b = 243.919 | β = 90 |
c = 109.732 | γ = 120 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
autoPROC | data scaling |
PHASER | phasing |
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Funding Organization | Location | Grant Number |
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Canadian Institutes of Health Research (CIHR) | Canada | Canada Research Excellence Chair |