Binding of chloromethyl ketone substrate analogues to crystalline papain DOI:10.2210/pdb6pad/pdb

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ENTRY 6PAD SUPERSEDES 7PAP Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Hydrolase/hydrolase Inhibitor Structure Weight: 23852.38 Molecule: PAPAIN Polymer: 1 Type: protein Length: 212 Chains: A EC#: 3.4.22.2    Organism Carica papaya UniProtKB:   Protein Feature View | Search PDB | P00784         Source Hide Polymer: 1 Scientific Name: Carica papaya   Taxonomy   Common Name: Papaya       Related PDB Entries Hide Identifier Details 1PAD  unspecified  2PAD  unspecified  4PAD  unspecified  5PAD  unspecified      Biologically Interesting Molecules (BIRD) Hide Identifier Image Name Type Class Chain ID   PRD_000333 Search  BENZYLOXYCARBONYL-PHENYLALANYL-METHYLENYLALANYL Peptide-like Inhibitor A   Ligand Explorer     Ligand Chemical Component Hide Identifier Formula Name Interactions 0PC Search  Download  C21 H23 Cl N2 O4 Nalpha-[(benzyloxy)carbonyl]-N-[(1S)-3-chloro- 1-methyl-2-oxopropyl]-L-phenylalaninamide   Ligand Explorer     External Domain Annotations Hide SCOP Classification v1.75: 1 Domain - data from SCOP   CATH Classification v3.4.0: 1 Domain - data from CATH   Pfam Classification: 1 Domain - data from Pfam   GO Terms: 4 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Drenth, J.,  Kalk, K.H.,  Swen, H.M. Deposition:   1976-11-01 Release:   1977-04-12 Last Modified (REVDAT):   2011-07-13 Previous versions:  7PAP     Revision History    Hide Mouse over text for details 2012-12-12 Other 2011-07-13 Atom nomenclature 2011-07-13 Binding sites and description 2011-07-13 Non-polymer description 2011-07-13 Function and keywords 2011-07-13 Flag nonstandard coordinate frame 2011-07-13 Linkage 2011-07-13 Sequence database correspondence 2011-07-13 Polymer description 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data: N/A Resolution[Å]:   2.80 R-Value: n/a R-Free: n/a Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 45.00 α = 90.00  b = 104.30 β = 90.00  c = 50.80 γ = 90.00      Molecule of the Month Hide PDB Pioneers