6LRV

Marsupenaeus japonicus ferritin mutant(T158H) pH9.0

• PDB DOI: https://doi.org/10.2210/pdb6LRV/pdb

• Classification: METAL BINDING PROTEIN
• Organism(s): Penaeus japonicus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2020-01-16 Released: 2020-11-25 
• Deposition Author(s): Zhao, G., Tan, X., Zhang, T.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 0.215 
• R-Value Work: 0.188 
• R-Value Observed: 0.189 

Literature

Converting histidine-induced 3D protein arrays in crystals into their 3D analogues in solution by metal coordination cross-linking.

Tan, X., Chen, H., Gu, C., Zhang, J., Zhang, T., Wang, H., Zhao, G.

(2020) Commun Chem 

• DOI: https://doi.org/10.1038/s42004-020-00394-x

Biological Assembly 1  

Global Symmetry: Octahedral - O  (Explore in 3D)
Global Stoichiometry: Homo 24-mer - A24 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: native gel electrophoresis

Macromolecule Content

• Total Structure Weight: 39.06 kDa 
• Atom Count: 2,819 
• Modelled Residue Count: 338 
• Deposited Residue Count: 340 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ferritin	A, B	170	Penaeus japonicus	Mutation(s): 1  EC: 1.16.3.1
UniProt
Find proteins for T2B7E1 (Penaeus japonicus) Explore T2B7E1  Go to UniProtKB:  T2B7E1

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 0.215 
• R-Value Work: 0.188 
• R-Value Observed: 0.189 
• Space Group: P 2 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 117.922	α = 90
b = 117.922	β = 90
c = 117.922	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data scaling
PDB_EXTRACT	data extraction
HKL-2000	data reduction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2020-11-25 
Deposition Author(s): Zhao, G., Tan, X., Zhang, T.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	31730069
National Natural Science Foundation of China (NSFC)		31972018

Revision History  

• Version 1.0: 2020-11-25
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Database references, Refinement description