6JBU

High resolution crystal structure of human FLRT3 LRR domain in complex with mouse CIRL3 Olfactomedin like domain

• PDB DOI: https://doi.org/10.2210/pdb6JBU/pdb

• Classification: CELL ADHESION
• Organism(s): Mus musculus, Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2019-01-26 Released: 2020-01-29 
• Deposition Author(s): Liu, H., Li, Z., Xu, F.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.85 Å
• R-Value Free: 0.234 
• R-Value Work: 0.208 
• R-Value Observed: 0.209 

Literature

High resolution crystal structure of human FLRT3 LRR domain in complex with mouse CIRL3 Olfactomedin like domain

Liu, H., Li, Z., Xu, F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 72.21 kDa 
• Atom Count: 5,137 
• Modelled Residue Count: 585 
• Deposited Residue Count: 623 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Adhesion G protein-coupled receptor L3	A	276	Mus musculus	Mutation(s): 0  Gene Names: Adgrl3, Kiaa0768, Lec3, Lphn3
UniProt & NIH Common Fund Data Resources
Find proteins for Q80TS3 (Mus musculus) Explore Q80TS3  Go to UniProtKB:  Q80TS3
IMPC:  MGI:2441950

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Leucine-rich repeat transmembrane protein FLRT3	B	347	Homo sapiens	Mutation(s): 0  Gene Names: FLRT3, KIAA1469, UNQ856/PRO1865
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NZU0 (Homo sapiens) Explore Q9NZU0  Go to UniProtKB:  Q9NZU0
PHAROS:  Q9NZU0 GTEx:  ENSG00000125848

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAG	L [auth B], M [auth B]	2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N
PO4	C [auth A], D [auth A]	PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K
EDO	G [auth A], H [auth A], I [auth A], J [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N
NA	E [auth A], F [auth A], K [auth A]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.85 Å
• R-Value Free: 0.234 
• R-Value Work: 0.208 
• R-Value Observed: 0.209 
• Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 121.135	α = 90
b = 121.135	β = 90
c = 83.413	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2020-01-29 
Deposition Author(s): Liu, H., Li, Z., Xu, F.

Revision History  

• Version 1.0: 2020-01-29
  Type: Initial release
  
• Version 1.1: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Data collection, Derived calculations, Structure summary
• Version 1.2: 2023-11-22
  Changes: Data collection, Database references, Refinement description, Structure summary