6IE5

Crystal structure of ADCP1 tandem Agenet domain 3-4

• PDB DOI: https://doi.org/10.2210/pdb6IE5/pdb

• Classification: TRANSLATION
• Organism(s): Arabidopsis thaliana
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2018-09-13 Released: 2019-01-16 
• Deposition Author(s): Zhao, S., Zhang, B., Li, H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 0.223 
• R-Value Work: 0.201 
• R-Value Observed: 0.202 

Literature

ADCP1-tandem Agenet domain 1-2 in complex wit h H3K9me2

Zhao, S., Zhang, B., Li, H.

(2019) Cell Res 29: 54-66

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: isothermal titration calorimetry

Macromolecule Content

• Total Structure Weight: 18.17 kDa 
• Atom Count: 1,205 
• Modelled Residue Count: 141 
• Deposited Residue Count: 160 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Agenet domain-containing protein	A	160	Arabidopsis thaliana	Mutation(s): 0  Gene Names: ADCP1
UniProt
Find proteins for Q500V5 (Arabidopsis thaliana) Explore Q500V5  Go to UniProtKB:  Q500V5

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 0.223 
• R-Value Work: 0.201 
• R-Value Observed: 0.202 
• Space Group: P 6₅ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 56.204	α = 90
b = 56.204	β = 90
c = 188.243	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data scaling
PDB_EXTRACT	data extraction
HKL-2000	data reduction
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2019-01-16 
Deposition Author(s): Zhao, S., Zhang, B., Li, H.

Revision History  

• Version 1.0: 2019-01-16
  Type: Initial release
  
• Version 1.1: 2024-03-27
  Changes: Data collection, Database references