6GXZ

Crystal structure of the human RPAP3(TPR2)-PIH1D1(CS) complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.96 Å
  • R-Value Free: 0.284 
  • R-Value Work: 0.223 
  • R-Value Observed: 0.226 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Deep Structural Analysis of RPAP3 and PIH1D1, Two Components of the HSP90 Co-chaperone R2TP Complex.

Henri, J.Chagot, M.E.Bourguet, M.Abel, Y.Terral, G.Maurizy, C.Aigueperse, C.Georgescauld, F.Vandermoere, F.Saint-Fort, R.Behm-Ansmant, I.Charpentier, B.Pradet-Balade, B.Verheggen, C.Bertrand, E.Meyer, P.Cianferani, S.Manival, X.Quinternet, M.

(2018) Structure 26: 1196-1209.e8

  • DOI: https://doi.org/10.1016/j.str.2018.06.002
  • Primary Citation of Related Structures:  
    6FD7, 6FDP, 6FDT, 6GXZ

  • PubMed Abstract: 

    RPAP3 and PIH1D1 are part of the HSP90 co-chaperone R2TP complex involved in the assembly process of many molecular machines. In this study, we performed a deep structural investigation of the HSP binding abilities of the two TPR domains of RPAP3. We combined 3D NMR, non-denaturing MS, and ITC techniques with Y2H, IP-LUMIER, FRET, and ATPase activity assays and explain the fundamental role played by the second TPR domain of RPAP3 in the specific recruitment of HSP90. We also established the 3D structure of an RPAP3:PIH1D1 sub-complex demonstrating the need for a 34-residue insertion, specific of RPAP3 isoform 1, for the tight binding of PIH1D1. We also confirm the existence of a complex lacking PIH1D1 in human cells (R2T), which shows differential binding to certain clients. These results highlight similarities and differences between the yeast and human R2TP complexes, and document the diversification of this family of co-chaperone complexes in human.


  • Organizational Affiliation

    LBMCE, UMR 8226 CNRS Sorbonne Université, IBPC, 75005 Paris, France.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
RNA polymerase II-associated protein 3A,
B [auth C]
165Homo sapiensMutation(s): 0 
Gene Names: RPAP3
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H6T3 (Homo sapiens)
Explore Q9H6T3 
Go to UniProtKB:  Q9H6T3
PHAROS:  Q9H6T3
GTEx:  ENSG00000005175 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9H6T3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
PIH1 domain-containing protein 1C [auth D],
D [auth E]
96Homo sapiensMutation(s): 0 
Gene Names: PIH1D1NOP17
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NWS0 (Homo sapiens)
Explore Q9NWS0 
Go to UniProtKB:  Q9NWS0
PHAROS:  Q9NWS0
GTEx:  ENSG00000104872 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NWS0
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download Ideal Coordinates CCD File 
E [auth A]CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.96 Å
  • R-Value Free: 0.284 
  • R-Value Work: 0.223 
  • R-Value Observed: 0.226 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 135.98α = 90
b = 42.44β = 98.25
c = 112.71γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
French National Research AgencyFranceANR-AA-BSV8-01503
French National Research AgencyFranceANR-16-CE11-0032-02

Revision History  (Full details and data files)

  • Version 1.0: 2018-08-08
    Type: Initial release
  • Version 1.1: 2018-09-12
    Changes: Data collection, Database references
  • Version 1.2: 2018-10-03
    Changes: Data collection
  • Version 1.3: 2024-01-17
    Changes: Advisory, Data collection, Database references, Derived calculations, Refinement description