6V2J

Crystal structure of ClC-ec1 triple mutant (E113Q, E148Q, E203Q)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.62 Å
  • R-Value Free: 0.262 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.196 

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This is version 1.3 of the entry. See complete history


Literature

A CLC-ec1 mutant reveals global conformational change and suggests a unifying mechanism for the CLC Cl - /H + transport cycle.

Chavan, T.S.Cheng, R.C.Jiang, T.Mathews, I.I.Stein, R.A.Koehl, A.Mchaourab, H.S.Tajkhorshid, E.Maduke, M.

(2020) Elife 9

  • DOI: https://doi.org/10.7554/eLife.53479
  • Primary Citation of Related Structures:  
    6V2J

  • PubMed Abstract: 

    Among coupled exchangers, CLCs uniquely catalyze the exchange of oppositely charged ions (Cl - for H + ). Transport-cycle models to describe and explain this unusual mechanism have been proposed based on known CLC structures. While the proposed models harmonize with many experimental findings, gaps and inconsistencies in our understanding have remained. One limitation has been that global conformational change - which occurs in all conventional transporter mechanisms - has not been observed in any high-resolution structure. Here, we describe the 2.6 Å structure of a CLC mutant designed to mimic the fully H + -loaded transporter. This structure reveals a global conformational change to improve accessibility for the Cl - substrate from the extracellular side and new conformations for two key glutamate residues. Together with DEER measurements, MD simulations, and functional studies, this new structure provides evidence for a unified model of H + /Cl - transport that reconciles existing data on all CLC-type proteins.


  • Organizational Affiliation

    Department of Molecular & Cellular Physiology, Stanford University School of Medicine, Stanford, United States.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
H(+)/Cl(-) exchange transporter ClcA489Escherichia coli K-12Mutation(s): 3 
Gene Names: clcAeriCyadQb0155JW5012
Membrane Entity: Yes 
UniProt
Find proteins for P37019 (Escherichia coli (strain K12))
Explore P37019 
Go to UniProtKB:  P37019
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP37019
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.62 Å
  • R-Value Free: 0.262 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.196 
  • Space Group: I 2 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 80.97α = 90
b = 120.44β = 90
c = 122.57γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
MOLREPphasing
PDB_EXTRACTdata extraction
XDSdata reduction
Aimlessdata scaling

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)United States41GM103393)
American Heart AssociationUnited States17POST33670553

Revision History  (Full details and data files)

  • Version 1.0: 2020-05-20
    Type: Initial release
  • Version 1.1: 2020-06-10
    Changes: Database references
  • Version 1.2: 2020-09-30
    Changes: Database references
  • Version 1.3: 2023-10-11
    Changes: Data collection, Database references, Refinement description