6UFY

B. theta Bile Salt Hydrolase

  • Classification: HYDROLASE
  • Organism(s): Bacteroides thetaiotaomicron VPI-5482
  • Expression System: Escherichia coli
  • Mutation(s): No 

  • Deposited: 2019-09-25 Released: 2020-02-19 
  • Deposition Author(s): Seegar, T.C.M.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Cancer Institute (NIH/NCI)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.71 Å
  • R-Value Free: 0.298 
  • R-Value Work: 0.256 
  • R-Value Observed: 0.258 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Development of a covalent inhibitor of gut bacterial bile salt hydrolases.

Adhikari, A.A.Seegar, T.C.M.Ficarro, S.B.McCurry, M.D.Ramachandran, D.Yao, L.Chaudhari, S.N.Ndousse-Fetter, S.Banks, A.S.Marto, J.A.Blacklow, S.C.Devlin, A.S.

(2020) Nat Chem Biol 16: 318-326

  • DOI: https://doi.org/10.1038/s41589-020-0467-3
  • Primary Citation of Related Structures:  
    6UFY, 6UH4

  • PubMed Abstract: 

    Bile salt hydrolase (BSH) enzymes are widely expressed by human gut bacteria and catalyze the gateway reaction leading to secondary bile acid formation. Bile acids regulate key metabolic and immune processes by binding to host receptors. There is an unmet need for a potent tool to inhibit BSHs across all gut bacteria to study the effects of bile acids on host physiology. Here, we report the development of a covalent pan-inhibitor of gut bacterial BSHs. From a rationally designed candidate library, we identified a lead compound bearing an alpha-fluoromethyl ketone warhead that modifies BSH at the catalytic cysteine residue. This inhibitor abolished BSH activity in conventional mouse feces. Mice gavaged with a single dose of this compound displayed decreased BSH activity and decreased deconjugated bile acid levels in feces. Our studies demonstrate the potential of a covalent BSH inhibitor to modulate bile acid composition in vivo.


  • Organizational Affiliation

    Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Choloylglycine hydrolaseA,
B,
C [auth D],
D [auth C]
336Bacteroides thetaiotaomicron VPI-5482Mutation(s): 0 
Gene Names: BT_2086
UniProt
Find proteins for Q8A600 (Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50))
Explore Q8A600 
Go to UniProtKB:  Q8A600
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8A600
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.71 Å
  • R-Value Free: 0.298 
  • R-Value Work: 0.256 
  • R-Value Observed: 0.258 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 84.88α = 90
b = 92.32β = 90
c = 194.25γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States5R35GM128618-02
National Institutes of Health/National Cancer Institute (NIH/NCI)United States5R35CA220340-03

Revision History  (Full details and data files)

  • Version 1.0: 2020-02-19
    Type: Initial release
  • Version 1.1: 2020-02-26
    Changes: Database references
  • Version 1.2: 2020-03-04
    Changes: Database references
  • Version 1.3: 2023-10-11
    Changes: Data collection, Database references, Refinement description