6RJU

C-terminal domain of TssA protein from T6SS of Escherichia coli.

PDB DOI: https://doi.org/10.2210/pdb6RJU/pdb
EM Map EMD-4906: EMDB EMDataResource

Classification: TRANSPORT PROTEIN
Organism(s): Escherichia coli
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2019-04-29 Released: 2020-06-03
Deposition Author(s): Nazarov, S., Shneider, M., Basler, M., Leiman, P.
Funding Organization(s): Swiss National Science Foundation

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM structure of TssA protein from Type VI secretion system of E. coli.

Nazarov, S., Demurtas, D., Shneider, M., Basler, M., Leiman, P.

To be published.

Macromolecule Content

Total Structure Weight: 59.16 kDa
Atom Count: 995
Modelled Residue Count: 131
Deposited Residue Count: 532
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative type VI secretion protein	A	532	Escherichia coli	Mutation(s): 0 Gene Names: NCTC12950_00920
UniProt
Find proteins for A0A376XSV1 (Escherichia coli) Explore A0A376XSV1 Go to UniProtKB: A0A376XSV1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A376XSV1
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION
MODEL REFINEMENT	PHENIX

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2020-06-03

Deposition Author(s):

Funding Organization	Location	Grant Number
Swiss National Science Foundation	Switzerland	BSSGI0_155778

Revision History (Full details and data files)

Version 1.0: 2020-06-03
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.