Download MendeleyProtein Crystallization in Ionic-Liquid Hydrogel Composite Membranes
Belviso, B.D., Caliandro, R., Salehi, S.M., di Profio, G., Caliandro, R.(2019) Crystals (Basel) 9: 253
6QUF
Protein crystallization by ionic liquid hydrogel support: reference crystal of glucose isomerase grown on standard silanized glass
- PDB DOI: https://doi.org/10.2210/pdb6QUF/pdb
- Classification: ISOMERASE
- Organism(s): Streptomyces rubiginosus
- Mutation(s): No
- Deposited: 2019-02-27 Released: 2019-03-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.19 Å
- R-Value Free: 0.129
- R-Value Work: 0.107
- R-Value Observed: 0.108
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Xylose isomerase | 388 | Streptomyces rubiginosus | Mutation(s): 0 EC: 5.3.1.5 |  | |
UniProt | |||||
Find proteins for P24300 (Streptomyces rubiginosus) Explore P24300 Go to UniProtKB: P24300 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P24300 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | F [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | D [auth A], E [auth A], G [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| MN Query on MN | B [auth A], C [auth A] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.19 Å
- R-Value Free: 0.129
- R-Value Work: 0.107
- R-Value Observed: 0.108
- Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 92.522 | α = 90 |
| b = 98.167 | β = 90 |
| c = 101.851 | γ = 90 |
| Software Name | Purpose |
|---|---|
| xia2 | data reduction |
| Aimless | data scaling |
| Sir2014 | phasing |
| REFMAC | refinement |
| BUSTER-TNT | refinement |
Entry History
Deposition Data
- Released Date: 2019-03-13 Deposition Author(s): Belviso, B.D., Caliandro, R., Caliandro, R.
Revision History (Full details and data files)
- Version 1.0: 2019-03-13
Type: Initial release - Version 1.1: 2019-05-22
Changes: Data collection - Version 1.2: 2019-07-10
Changes: Data collection - Version 1.3: 2019-09-25
Changes: Data collection, Database references - Version 1.4: 2020-04-08
Changes: Database references - Version 1.5: 2024-01-24
Changes: Data collection, Database references, Refinement description
