6OXB

First bromo-adjacent homology (BAH) domain of human Polybromo-1 (PBRM1)

PDB DOI: https://doi.org/10.2210/pdb6OXB/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2019-05-13 Released: 2020-05-20
Deposition Author(s): Petojevic, T., Holliday, M.J., Fairbrother, W.J., Cochran, A.G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.86 Å
R-Value Free: 0.217
R-Value Work: 0.179
R-Value Observed: 0.179

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Polyvalent nucleosome recognition by Polybromo-1 anchors chromatin remodeling

Petojevic, T., Holliday, M.J., Dimitrova, Y.N., Noland, C.L., Fairbrother, W.J., Cochran, A.G.

To be published.

Macromolecule Content

Total Structure Weight: 125.24 kDa
Atom Count: 8,790
Modelled Residue Count: 947
Deposited Residue Count: 1,062
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein polybromo-1	A [auth B] B [auth A] C D E A [auth B], B [auth A], C, D, E, F	177	Homo sapiens	Mutation(s): 0 Gene Names: PBRM1, BAF180, PB1
UniProt & NIH Common Fund Data Resources
Find proteins for Q86U86 (Homo sapiens) Explore Q86U86 Go to UniProtKB: Q86U86
PHAROS: Q86U86 GTEx: ENSG00000163939
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q86U86
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain AA [auth D] SDF format, chain BA [auth E] SDF format, chain CA [auth E] SDF format, chain DA [auth E] SDF format, chain EA [auth E] SDF format, chain FA [auth E] SDF format, chain G [auth B] SDF format, chain GA [auth F] SDF format, chain H [auth B] SDF format, chain HA [auth F] SDF format, chain I [auth B] SDF format, chain IA [auth F] SDF format, chain J [auth B] SDF format, chain JA [auth F] SDF format, chain K [auth B] SDF format, chain KA [auth F] SDF format, chain L [auth A] SDF format, chain M [auth A] SDF format, chain N [auth A] SDF format, chain O [auth A] SDF format, chain P [auth A] SDF format, chain Q [auth A] SDF format, chain S [auth C] SDF format, chain T [auth C] SDF format, chain U [auth C] SDF format, chain V [auth C] SDF format, chain W [auth C] SDF format, chain X [auth D] SDF format, chain Y [auth D] SDF format, chain Z [auth D] MOL2 format, chain AA [auth D] MOL2 format, chain BA [auth E] MOL2 format, chain CA [auth E] MOL2 format, chain DA [auth E] MOL2 format, chain EA [auth E] MOL2 format, chain FA [auth E] MOL2 format, chain G [auth B] MOL2 format, chain GA [auth F] MOL2 format, chain H [auth B] MOL2 format, chain HA [auth F] MOL2 format, chain I [auth B] MOL2 format, chain IA [auth F] MOL2 format, chain J [auth B] MOL2 format, chain JA [auth F] MOL2 format, chain K [auth B] MOL2 format, chain KA [auth F] MOL2 format, chain L [auth A] MOL2 format, chain M [auth A] MOL2 format, chain N [auth A] MOL2 format, chain O [auth A] MOL2 format, chain P [auth A] MOL2 format, chain Q [auth A] MOL2 format, chain S [auth C] MOL2 format, chain T [auth C] MOL2 format, chain U [auth C] MOL2 format, chain V [auth C] MOL2 format, chain W [auth C] MOL2 format, chain X [auth D] MOL2 format, chain Y [auth D] MOL2 format, chain Z [auth D]	AA [auth D] BA [auth E] CA [auth E] DA [auth E] EA [auth E] AA [auth D], BA [auth E], CA [auth E], DA [auth E], EA [auth E], FA [auth E], G [auth B], GA [auth F], H [auth B], HA [auth F], I [auth B], IA [auth F], J [auth B], JA [auth F], K [auth B], KA [auth F], L [auth A], M [auth A], N [auth A], O [auth A], P [auth A], Q [auth A], S [auth C], T [auth C], U [auth C], V [auth C], W [auth C], X [auth D], Y [auth D], Z [auth D]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain AA [auth D] Focus chain BA [auth E] Focus chain CA [auth E] Focus chain DA [auth E] Focus chain EA [auth E] Focus chain FA [auth E] Focus chain G [auth B] Focus chain GA [auth F] Focus chain H [auth B] Focus chain HA [auth F] Focus chain I [auth B] Focus chain IA [auth F] Focus chain J [auth B] Focus chain JA [auth F] Focus chain K [auth B] Focus chain KA [auth F] Focus chain L [auth A] Focus chain M [auth A] Focus chain N [auth A] Focus chain O [auth A] Focus chain P [auth A] Focus chain Q [auth A] Focus chain S [auth C] Focus chain T [auth C] Focus chain U [auth C] Focus chain V [auth C] Focus chain W [auth C] Focus chain X [auth D] Focus chain Y [auth D] Focus chain Z [auth D] Interactions & Density Focus chain AA [auth D] Focus chain BA [auth E] Focus chain CA [auth E] Focus chain DA [auth E] Focus chain EA [auth E] Focus chain FA [auth E] Focus chain G [auth B] Focus chain GA [auth F] Focus chain H [auth B] Focus chain HA [auth F] Focus chain I [auth B] Focus chain IA [auth F] Focus chain J [auth B] Focus chain JA [auth F] Focus chain K [auth B] Focus chain KA [auth F] Focus chain L [auth A] Focus chain M [auth A] Focus chain N [auth A] Focus chain O [auth A] Focus chain P [auth A] Focus chain Q [auth A] Focus chain S [auth C] Focus chain T [auth C] Focus chain U [auth C] Focus chain V [auth C] Focus chain W [auth C] Focus chain X [auth D] Focus chain Y [auth D] Focus chain Z [auth D]
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain LA [auth F] SDF format, chain R [auth A] MOL2 format, chain LA [auth F] MOL2 format, chain R [auth A]	LA [auth F], R [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain LA [auth F] Focus chain R [auth A] Interactions & Density Focus chain LA [auth F] Focus chain R [auth A]