Crystal structure of Sel1 repeat protein from Oxalobacter formigenes
Chang, C., Tesar, C., Endres, M., Babnigg, G., Hassan, H., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Sel1 repeat protein | 151 | Oxalobacter formigenes OXCC13 | Mutation(s): 0  Gene Names: OFBG_00636 EC: 3.5.2.6 | ||
UniProt | |||||
Find proteins for C3X8T2 (Oxalobacter formigenes OXCC13) Explore C3X8T2  Go to UniProtKB:  C3X8T2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3X8T2 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Sel1 repeat protein | 151 | Oxalobacter formigenes OXCC13 | Mutation(s): 0  Gene Names: OFBG_00636 EC: 3.5.2.6 | ||
UniProt | |||||
Find proteins for C3X8T2 (Oxalobacter formigenes OXCC13) Explore C3X8T2  Go to UniProtKB:  C3X8T2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3X8T2 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Sel1 repeat protein | 151 | Oxalobacter formigenes OXCC13 | Mutation(s): 0  Gene Names: OFBG_00636 EC: 3.5.2.6 | ||
UniProt | |||||
Find proteins for C3X8T2 (Oxalobacter formigenes OXCC13) Explore C3X8T2  Go to UniProtKB:  C3X8T2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3X8T2 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 4 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Sel1 repeat protein | 151 | Oxalobacter formigenes OXCC13 | Mutation(s): 0  Gene Names: OFBG_00636 EC: 3.5.2.6 | ||
UniProt | |||||
Find proteins for C3X8T2 (Oxalobacter formigenes OXCC13) Explore C3X8T2  Go to UniProtKB:  C3X8T2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3X8T2 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PGE Query on PGE | E [auth C] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N | |||
IMD Query on IMD | G [auth D] | IMIDAZOLE C3 H5 N2 RAXXELZNTBOGNW-UHFFFAOYSA-O | |||
CL Query on CL | F [auth D] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Modified Residues 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
MLY Query on MLY | A | L-PEPTIDE LINKING | C8 H18 N2 O2 | LYS | |
MLZ Query on MLZ | A | L-PEPTIDE LINKING | C7 H16 N2 O2 | LYS | |
MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 42.768 | α = 68.54 |
b = 68.587 | β = 79.25 |
c = 74.365 | γ = 89.97 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
PDB_EXTRACT | data extraction |
HKL-3000 | phasing |