Download MendeleyCrystal Structure of the Putative Class A Beta-Lactamase PenP from Rhodopseudomonas palustris
Kim, Y., Tesar, C., Endres, M., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)To be published.
6NIQ
Crystal Structure of the Putative Class A Beta-Lactamase PenP from Rhodopseudomonas palustris
- PDB DOI: https://doi.org/10.2210/pdb6NIQ/pdb
- Classification: HYDROLASE
- Organism(s): Rhodopseudomonas palustris CGA009
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2018-12-31 Released: 2019-01-16
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.35 Å
- R-Value Free: 0.176
- R-Value Work: 0.148
- R-Value Observed: 0.150
wwPDB Validation 3D Report Full Report
Currently 6NIQ does not have a validation slider image.
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Beta-lactamase | 267 | Rhodopseudomonas palustris CGA009 | Mutation(s): 0 Gene Names: penA, penP, RPA0362 EC: 3.5.2.6 |  | |
UniProt | |||||
Find proteins for Q6NCV7 (Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)) Explore Q6NCV7 Go to UniProtKB: Q6NCV7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6NCV7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PG4 Query on PG4 | C [auth A] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N |  | ||
| PEG Query on PEG | D [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | F [auth A], I [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| FMT Query on FMT | E [auth A], J [auth B] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | ||
| CL Query on CL | G [auth A], H [auth A], K [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.35 Å
- R-Value Free: 0.176
- R-Value Work: 0.148
- R-Value Observed: 0.150
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 69.608 | α = 90 |
| b = 69.711 | β = 90 |
| c = 112.505 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
| MOLREP | phasing |
Structure Validation
Currently 6NIQ does not have a validation slider image.
Entry History & Funding Information
Deposition Data
- Released Date: 2019-01-16 Deposition Author(s): Kim, Y., Tesar, C., Endres, M., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2019-01-16
Type: Initial release - Version 1.1: 2019-12-18
Changes: Author supporting evidence - Version 1.2: 2023-10-11
Changes: Data collection, Database references, Refinement description
