Rare metal binding by a cell-surface component of bacterial EfeUOB iron importer
Okumura, K., Takase, R., Mikami, B., Murata, K., Hashimoto, W.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Peroxidase EfeB | 447 | Sphingomonas sp. A1 | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
HEM Query on HEM | C [auth A], V [auth B] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L | |||
PGE Query on PGE | JA [auth B], KA [auth B], LA [auth B] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N | |||
PEG Query on PEG | E [auth A], F [auth A], G [auth A], X [auth B], Y [auth B] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
EDO Query on EDO | AA [auth B] BA [auth B] CA [auth B] DA [auth B] EA [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
OXY Query on OXY | D [auth A], W [auth B] | OXYGEN MOLECULE O2 MYMOFIZGZYHOMD-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 100.02 | α = 90 |
b = 104.99 | β = 90 |
c = 83.81 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
Aimless | data scaling |
XDS | data reduction |
MOLREP | phasing |
Funding Organization | Location | Grant Number |
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Japan Society for the Promotion of Science | Japan | -- |