6HS9

The crystal structure of type II Dehydroquinase from Butyrivibrio crossotus DSM 2876


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.05 Å
  • R-Value Free: 0.134 
  • R-Value Work: 0.113 
  • R-Value Observed: 0.114 

Starting Model: experimental
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Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

The crystal structure of type II Dehydroquinase from Butyrivibrio crossotus DSM 2876

Lapthorn, A.J.Ner, L.Roszak, A.W.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
3-dehydroquinate dehydratase145Eshraghiella crossota DSM 2876Mutation(s): 0 
Gene Names: aroQBUTYVIB_01550
EC: 4.2.1.10
UniProt
Find proteins for D4S0D1 (Butyrivibrio crossotus DSM 2876)
Explore D4S0D1 
Go to UniProtKB:  D4S0D1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupD4S0D1
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
3DS
Query on 3DS

Download Ideal Coordinates CCD File 
B [auth A](4S,5R)-4,5-dihydroxy-3-oxocyclohex-1-ene-1-carboxylic acid
C7 H8 O5
SLWWJZMPHJJOPH-PHDIDXHHSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.05 Å
  • R-Value Free: 0.134 
  • R-Value Work: 0.113 
  • R-Value Observed: 0.114 
  • Space Group: H 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 79.55α = 90
b = 79.55β = 90
c = 72.28γ = 120
Software Package:
Software NamePurpose
XDSdata reduction
Aimlessdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Engineering and Physical Sciences Research CouncilUnited KingdomEP/P00086X/1

Revision History  (Full details and data files)

  • Version 1.0: 2019-10-23
    Type: Initial release
  • Version 1.1: 2024-01-24
    Changes: Data collection, Database references, Refinement description