6GL6

apo [FeFe]-hydrogenase HydA1 from Chlamydomonas reinhardtii, variant C377H


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.197 
  • R-Value Work: 0.169 
  • R-Value Observed: 0.171 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

His-Ligation to the [4Fe-4S] Subcluster Tunes the Catalytic Bias of [FeFe] Hydrogenase.

Rodriguez-Macia, P.Kertess, L.Burnik, J.Birrell, J.A.Hofmann, E.Lubitz, W.Happe, T.Rudiger, O.

(2019) J Am Chem Soc 141: 472-481

  • DOI: https://doi.org/10.1021/jacs.8b11149
  • Primary Citation of Related Structures:  
    6GL6

  • PubMed Abstract: 

    [FeFe] hydrogenases interconvert H 2 into protons and electrons reversibly and efficiently. The active site H-cluster is composed of two sites: a unique [2Fe] subcluster ([2Fe] H ) covalently linked via cysteine to a canonical [4Fe-4S] cluster ([4Fe-4S] H ). Both sites are redox active and electron transfer is proton-coupled, such that the potential of the H-cluster lies very close to the H 2 thermodynamic potential, which confers the enzyme with the ability to operate quickly in both directions without energy losses. Here, one of the cysteines coordinating [4Fe-4S] H (Cys362) in the [FeFe] hydrogenase from the green algae Chlamydomonas reinhardtii ( CrHydA1) was exchanged with histidine and the resulting C362H variant was shown to contain a [4Fe-4S] cluster with a more positive redox potential than the wild-type. The change in the [4Fe-4S] cluster potential resulted in a shift of the catalytic bias, diminishing the H 2 production activity but giving significantly higher H 2 oxidation activity, albeit with a 200 mV overpotential requirement. These results highlight the importance of the [4Fe-4S] cluster as an electron injection site, modulating the redox potential and the catalytic properties of the H-cluster.


  • Organizational Affiliation

    Max Planck Institute for Chemical Energy Conversion , Stiftstraße 34-36 , 45470 Mülheim an der Ruhr , Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Fe-hydrogenase452Chlamydomonas reinhardtiiMutation(s): 1 
Gene Names: hyd1HYD1hydAhydA1CHLRE_03g199800v5CHLREDRAFT_183963
EC: 1.18.99.1
UniProt
Find proteins for Q9FYU1 (Chlamydomonas reinhardtii)
Explore Q9FYU1 
Go to UniProtKB:  Q9FYU1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9FYU1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.197 
  • R-Value Work: 0.169 
  • R-Value Observed: 0.171 
  • Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 70.73α = 90
b = 70.73β = 90
c = 155.9γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHENIXphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research FoundationGermanyEXC1069
German Research FoundationGermanyDIP Programme (LU 315/17-1)

Revision History  (Full details and data files)

  • Version 1.0: 2018-12-26
    Type: Initial release
  • Version 1.1: 2019-05-01
    Changes: Data collection, Database references