6GIC

Crystal structure of glutathione transferase Omega 2S from Trametes versicolor in complex with oxyresveratrol

PDB DOI: https://doi.org/10.2210/pdb6GIC/pdb

Classification: TRANSFERASE
Organism(s): Trametes versicolor
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-05-10 Released: 2018-09-12
Deposition Author(s): Schwartz, M., Favier, F., Didierjean, C.
Funding Organization(s): French National Research Agency

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.252
R-Value Work: 0.193
R-Value Observed: 0.196

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Fungal glutathione transferases as tools to explore the chemical diversity of Amazonian wood extractives

Perrot, T., Schwartz, M., Saiag, F., Salzet, G., Dumarcay, S., Favier, F., Gerardin, P., Girardet, J.-M., Sormani, R., Morel-Rouhier, M., Amusant, N., Didierjean, C., Gelhaye, E.

(2018) Acs Sust Chem Eng

DOI: https://doi.org/10.1021/acssuschemeng.8b02636

Macromolecule Content

Total Structure Weight: 55.17 kDa
Atom Count: 3,790
Modelled Residue Count: 466
Deposited Residue Count: 490
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutathione transferase Omega 2S	A, B	245	Trametes versicolor	Mutation(s): 0
UniProt
Find proteins for A0A452CSY5 (Trametes versicolor) Explore A0A452CSY5 Go to UniProtKB: A0A452CSY5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A452CSY5
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
EZH Query on EZH Download Ideal Coordinates CCD File SDF format, chain E [auth B] MOL2 format, chain E [auth B]	E [auth B]	cis-oxyresveratrol C₁₄ H₁₂ O₄ PDHAOJSHSJQANO-UPHRSURJSA-N		Interactions Focus chain E [auth B] Interactions & Density Focus chain E [auth B]
EZE Query on EZE Download Ideal Coordinates CCD File SDF format, chain D [auth B] MOL2 format, chain D [auth B]	D [auth B]	trans-oxyresveratrol C₁₄ H₁₂ O₄ PDHAOJSHSJQANO-OWOJBTEDSA-N		Interactions Focus chain D [auth B] Interactions & Density Focus chain D [auth B]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain C [auth B] MOL2 format, chain C [auth B]	C [auth B]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain C [auth B] Interactions & Density Focus chain C [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.252
R-Value Work: 0.193
R-Value Observed: 0.196
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.612	α = 90
b = 93.903	β = 90
c = 95.8	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
MOLREP	phasing

Structure Validation

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Ligand Structure Quality Assessment

Entry History & Funding Information

Deposition Data

Released Date: 2018-09-12

Deposition Author(s):

Schwartz, M.

Favier, F.

Didierjean, C.

Funding Organization	Location	Grant Number
French National Research Agency	France	ANR-11-LAS-0002-01

Revision History (Full details and data files)

Version 1.0: 2018-09-12
Type: Initial release
Version 1.1: 2024-01-17
Changes: Data collection, Database references, Derived calculations, Refinement description

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Help and Resources

6GIC

Crystal structure of glutathione transferase Omega 2S from Trametes versicolor in complex with oxyresveratrol

Fungal glutathione transferases as tools to explore the chemical diversity of Amazonian wood extractives

Entity ID: 1

UniProt

Entity Groups

Sequence Annotations

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Experimental Data

Structure Validation

Ligand Structure Quality Assessment

Deposition Data

Revision History (Full details and data files)