Download MendeleyCrystal structure of Signal recognition particle receptor FtsY from Elizabethkingia anophelis in complex with GDP
Delker, S.L., Abendroth, J., Lorimer, D., Edwards, T.E.To be published.
6CY5
Crystal structure of Signal recognition particle receptor FtsY from Elizabethkingia anophelis in complex with GDP
- PDB DOI: https://doi.org/10.2210/pdb6CY5/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Elizabethkingia anophelis NUHP1
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2018-04-04 Released: 2018-05-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.194
- R-Value Work: 0.157
- R-Value Observed: 0.158
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Signal recognition particle receptor FtsY | 329 | Elizabethkingia anophelis NUHP1 | Mutation(s): 0 Gene Names: ftsY, BD94_0405 |  | |
UniProt | |||||
Find proteins for A0A077EFA5 (Elizabethkingia anophelis NUHP1) Explore A0A077EFA5 Go to UniProtKB: A0A077EFA5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A077EFA5 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GDP (Subject of Investigation/LOI) Query on GDP | C [auth A], E [auth A], J [auth B] | GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N |  | ||
| EDO Query on EDO | F [auth A] G [auth A] H [auth A] I [auth A] L [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| MG Query on MG | D [auth A], K [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.194
- R-Value Work: 0.157
- R-Value Observed: 0.158
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 49.52 | α = 101.18 |
| b = 49.64 | β = 99.1 |
| c = 69.71 | γ = 105.58 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2018-05-02 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2018-05-02
Type: Initial release - Version 1.1: 2020-01-15
Changes: Data collection - Version 1.2: 2024-03-13
Changes: Data collection, Database references, Derived calculations, Refinement description
