6BDA

Wild-type I-OnuI bound to A3G substrate (post-cleavage complex)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.88 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.191 
  • R-Value Observed: 0.193 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Wild-type I-OnuI bound to A3G substrate (post-cleavage complex)

Laforet, M.McMurrough, T.Brown, C.Zhang, K.Junop, M.Gloor, G.B.Edgell, D.R.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein 3/homing endonuclease-like protein fusion307Ophiostoma novo-ulmi subsp. americanaMutation(s): 0 
Gene Names: HEG fusionrps3
UniProt
Find proteins for Q4VWW5 (Ophiostoma novo-ulmi subsp. americana)
Explore Q4VWW5 
Go to UniProtKB:  Q4VWW5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ4VWW5
Sequence Annotations
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  • Reference Sequence

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Entity ID: 2
MoleculeChains LengthOrganismImage
Cleaved Cognate DNA strand, +11 sense14Ophiostoma novo-ulmi
Sequence Annotations
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  • Reference Sequence

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Entity ID: 3
MoleculeChains LengthOrganismImage
Cleaved cognate DNA strand, -11 sense11Ophiostoma novo-ulmi
Sequence Annotations
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  • Reference Sequence

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Entity ID: 4
MoleculeChains LengthOrganismImage
Cleaved cognate DNA strand, -11 antisense15Ophiostoma novo-ulmi
Sequence Annotations
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  • Reference Sequence

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Entity ID: 5
MoleculeChains LengthOrganismImage
Cleaved cognate DNA strand, +11 antisense10Ophiostoma novo-ulmi
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.88 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.191 
  • R-Value Observed: 0.193 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 42.69α = 90
b = 68.98β = 90
c = 161.72γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
MOSFLMdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-10-24
    Type: Initial release
  • Version 1.1: 2024-03-13
    Changes: Data collection, Database references, Derived calculations