Download MendeleyPhosphotriesterase variant S5 + TS analogue
Miton, C.M., Campbell, E.C., Jackson, C.J., Tokuriki, N.To be published.
6B2F
Phosphotriesterase variant S5 + TS analogue
- PDB DOI: https://doi.org/10.2210/pdb6B2F/pdb
- Classification: HYDROLASE
- Organism(s): Brevundimonas diminuta
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2017-09-20 Released: 2019-01-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.77 Å
- R-Value Free: 0.230
- R-Value Work: 0.196
- R-Value Observed: 0.197
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Phosphotriesterase | A, B [auth G] | 333 | Brevundimonas diminuta | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A060GYS1 (Brevundimonas diminuta) Explore A0A060GYS1 Go to UniProtKB: A0A060GYS1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A060GYS1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HLN (Subject of Investigation/LOI) Query on HLN | F [auth A], M [auth G] | hexyl(naphthalen-2-yloxy)phosphinic acid C16 H21 O3 P UBECMGZHZQOIIW-UHFFFAOYSA-N |  | ||
| MPD Query on MPD | E [auth A] G [auth A] H [auth A] I [auth A] L [auth G] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |  | ||
| ZN Query on ZN | C [auth A], D [auth A], J [auth G], K [auth G] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| KCX Query on KCX | A, B [auth G] | L-PEPTIDE LINKING | C7 H14 N2 O4 |  | LYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.77 Å
- R-Value Free: 0.230
- R-Value Work: 0.196
- R-Value Observed: 0.197
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 84.66 | α = 90 |
| b = 85.02 | β = 90 |
| c = 87.94 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| iMOSFLM | data reduction |
| SCALA | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2019-01-23 Deposition Author(s): Miton, C.M., Campbell, E.C., Jackson, C.J., Tokuriki, N.
Revision History (Full details and data files)
- Version 1.0: 2019-01-23
Type: Initial release - Version 1.1: 2023-10-04
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.2: 2023-11-15
Changes: Data collection
