6A8R

Crystal structure of DUX4 HD2 domain associated with ERG DNA binding site


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.201 

Starting Models: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

DUX4HD2-DNAERGstructure reveals new insight into DUX4-Responsive-Element.

Dong, X.Zhang, H.Cheng, N.Li, K.Meng, G.

(2019) Leukemia 33: 550-553


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Double homeobox protein 4A [auth B],
B [auth A]
60Homo sapiensMutation(s): 0 
Gene Names: DUX4DUX10
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UBX2 (Homo sapiens)
Explore Q9UBX2 
Go to UniProtKB:  Q9UBX2
PHAROS:  Q9UBX2
GTEx:  ENSG00000260596 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9UBX2
Sequence Annotations
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  • Reference Sequence

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Entity ID: 2
MoleculeChains LengthOrganismImage
DNA (5'-D(P*TP*GP*AP*TP*GP*AP*GP*AP*TP*T)-3')C [auth E]11Homo sapiens
Sequence Annotations
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  • Reference Sequence

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Entity ID: 3
MoleculeChains LengthOrganismImage
DNA (5'-D(P*AP*AP*TP*CP*TP*CP*AP*TP*CP*A)-3')D [auth F]11Homo sapiens
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.201 
  • Space Group: P 31
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 32.55α = 90
b = 32.55β = 90
c = 126.591γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina81770142

Revision History  (Full details and data files)

  • Version 1.0: 2018-10-24
    Type: Initial release
  • Version 1.1: 2018-11-07
    Changes: Data collection, Database references
  • Version 1.2: 2019-02-20
    Changes: Data collection, Database references
  • Version 1.3: 2023-11-22
    Changes: Data collection, Database references, Refinement description