Download MendeleyNew tetrameric forms of the rotavirus NSP4 with antiparallel helices
Suguna, K., Kumar, S.To be published.
5Y9R
Crystal structure of the oligomerization domain of NSP4 from rotavirus strain MF66
- PDB DOI: https://doi.org/10.2210/pdb5Y9R/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Bovine rotavirus G10
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2017-08-28 Released: 2018-09-05
- Funding Organization(s): Department of Biotechnology (DBT)-Indian Institute of Science, Partnership program for advanced Research in Biological Science and Bioengineering
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.238
- R-Value Work: 0.202
- R-Value Observed: 0.204
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Nonstructural protein 4 | A, B, C [auth D], D [auth C] | 46 | Bovine rotavirus G10 | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q6QT01 (Bovine rotavirus G10) Explore Q6QT01 Go to UniProtKB: Q6QT01 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6QT01 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CD Query on CD | G [auth B] | CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | F [auth A], I [auth D], J [auth C], K [auth C] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| NI Query on NI | E [auth A], H [auth B] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.238
- R-Value Work: 0.202
- R-Value Observed: 0.204
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 51.12 | α = 90 |
| b = 57.43 | β = 90 |
| c = 62.6 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| iMOSFLM | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-09-05 Deposition Author(s): Suguna, K., Kumar, S.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Department of Biotechnology (DBT)-Indian Institute of Science, Partnership program for advanced Research in Biological Science and Bioengineering | India | -- |
Revision History (Full details and data files)
- Version 1.0: 2018-09-05
Type: Initial release - Version 1.1: 2024-03-27
Changes: Data collection, Database references, Derived calculations
