Download MendeleyPolygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide
Zhao, W.X.To be published.
5X2I
Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide
- PDB DOI: https://doi.org/10.2210/pdb5X2I/pdb
- Classification: LYASE
- Organism(s): Bacillus subtilis subsp. subtilis str. 168
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2017-01-31 Released: 2018-08-08
- Funding Organization(s): National Natural Science Foundation of China
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.200
- R-Value Work: 0.176
- R-Value Observed: 0.177
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Pectate lyase | 399 | Bacillus subtilis subsp. subtilis str. 168 | Mutation(s): 0 Gene Names: pel, BSU07560 EC: 4.2.2.2 |  | |
UniProt | |||||
Find proteins for P39116 (Bacillus subtilis (strain 168)) Explore P39116 Go to UniProtKB: P39116 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P39116 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | B [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| CL Query on CL | C [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.200
- R-Value Work: 0.176
- R-Value Observed: 0.177
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 41.094 | α = 67.51 |
| b = 51.212 | β = 74.93 |
| c = 51.296 | γ = 78.75 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-08-08 Deposition Author(s): Zhao, W.X.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Natural Science Foundation of China | China | 31401638 |
Revision History (Full details and data files)
- Version 1.0: 2018-08-08
Type: Initial release - Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description
