5WR3

Thermolysin, SFX liganded form with water-based carrier


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.160
  • R-Value Work: 0.126

Literature

Macromolecules
Sequence Display for 5WR3

Classification: HYDROLASE

Total Structure Weight: 34853.29

Macromolecule Entities
Molecule Chains Length Organism Details
Thermolysin A 316 Geobacillus stearothermophilus EC#: 3.4.24.27 IUBMB
Fragment: UNP residues 236-551
Gene Name(s): nprS nprM
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NX6
Query on NX6

A N-[(benzyloxy)carbonyl]-L-aspartic acid
C12 H13 N O6
XYXYXSKSTZAEJW-VIFPVBQESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.160
  • R-Value Work: 0.126
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 93.59 α = 90.00
b = 93.59 β = 90.00
c = 131.22 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2016-11-29
  • Released Date: 2017-08-16
  • Deposition author(s): Kunishima, N., Naitow, H., Matsuura, Y.

Revision History

No revisions since initial release