Download MendeleyPhosphotriesterase variant S5+254R
Miton, C.M., Campbell, E.C., Jackson, C.J., Tokuriki, N.To be published.
5WJ0
Phosphotriesterase variant S5+254R
- PDB DOI: https://doi.org/10.2210/pdb5WJ0/pdb
- Classification: HYDROLASE
- Organism(s): Brevundimonas diminuta
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2017-07-21 Released: 2019-01-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.248
- R-Value Work: 0.215
- R-Value Observed: 0.217
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Phosphotriesterase | A, B [auth G] | 333 | Brevundimonas diminuta | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A060GZX0 (Brevundimonas diminuta) Explore A0A060GZX0 Go to UniProtKB: A0A060GZX0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A060GZX0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CAC Query on CAC | H [auth A], N [auth G] | CACODYLATE ION C2 H6 As O2 OGGXGZAMXPVRFZ-UHFFFAOYSA-M |  | ||
| MPD Query on MPD | E [auth A] F [auth A] G [auth A] I [auth G] J [auth G] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |  | ||
| ZN Query on ZN | C [auth A], D [auth A], K [auth G], L [auth G] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| KCX Query on KCX | A, B [auth G] | L-PEPTIDE LINKING | C7 H14 N2 O4 |  | LYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.248
- R-Value Work: 0.215
- R-Value Observed: 0.217
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 85.327 | α = 90 |
| b = 85.785 | β = 90 |
| c = 88.28 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2019-01-23 Deposition Author(s): Miton, C.M., Campbell, E.C., Jackson, C.J., Tokuriki, N.
Revision History (Full details and data files)
- Version 1.0: 2019-01-23
Type: Initial release - Version 1.1: 2023-10-04
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.2: 2023-11-15
Changes: Data collection
