5U4W

Cryo-EM Structure of Immature Zika Virus


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.1 Å
  • Aggregation State: Particle
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 5U4W

Classification: VIRUS

Total Structure Weight: 204553.14

Macromolecule Entities
Molecule Chains Length Organism Details
E protein A, C, E 402 Zika virus Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
pr domain B, D, F 81 Zika virus Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Protein E G, I, K 66 Zika virus Fragment: transmembrane domain (UNP residues 726-791)
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
M protein H, J, L 53 Zika virus Fragment: transmembrane domain (UNP residues 238-290)
Gene Name(s):

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B, C, D, E, F N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

B, D, F BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.1 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-12-06
  • Released Date: 2017-01-11
  • Deposition author(s): Mangala Prasad, V., Miller, A.S., Klose, T., Sirohi, D., Buda, G., Jiang, W., Kuhn, R.J., Rossmann, M.G.

Revision History

  • Version 1_0: 2017-01-11

    Type: Initial release

  • Version 1_1: 2017-01-25

    Type: Database references

  • Version 1_2: 2017-02-22

    Type: Database references

  • Version 1_3: 2017-09-13

    Type: Author supporting evidence, Data collection