Human Gasdermin-B and disease: Sulfatide Binding, Caspase cleavage, and Structural impact of Asthma- and IBS-Associated Polymorphism
Chao, L.K., Kulakova, L., Herzberg, O.(2017) Proc Natl Acad Sci U S A 
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
(2017) Proc Natl Acad Sci U S A 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Sugar ABC transporter substrate-binding protein,Gasdermin-B | 557 | Escherichia coli, Homo sapiens This entity is chimeric | Mutation(s): 0  Gene Names: malE, OO96_18925 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q8TAX9 (Homo sapiens) Explore Q8TAX9  Go to UniProtKB:  Q8TAX9 | |||||
PHAROS:  Q8TAX9 GTEx:  ENSG00000073605  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8TAX9 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ACT Query on ACT | E [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M | |||
NA Query on NA | F [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Entity ID: 2 | |||||
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ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900001 Query on PRD_900001 | C, D | alpha-maltose | Oligosaccharide / Nutrient |
Length ( Å ) | Angle ( ˚ ) |
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a = 104.06 | α = 90 |
b = 104.06 | β = 90 |
c = 252.21 | γ = 90 |
Software Name | Purpose |
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MOSFLM | data reduction |
Aimless | data scaling |
PHASER | phasing |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R01-GM102810 |