5KN7

Lipid A secondary acyltransferase LpxM from Acinetobacter baumannii


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.213

Literature

Macromolecules
Sequence Display for 5KN7

Classification: TRANSFERASE

Total Structure Weight: 39891.12

Macromolecule Entities
Molecule Chains Length Organism Details
Lipid A biosynthesis lauroyl acyltransferase B 333 Acinetobacter baumannii Gene Name(s): F910_00940
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: MONOTOPIC MEMBRANE PROTEINS

Subgroup Name: Acyltransferases

Protein Name: LpxM lipid A acyltransferase


Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LMT
Query on LMT

B DODECYL-BETA-D-MALTOSIDE
C24 H46 O11
NLEBIOOXCVAHBD-QKMCSOCLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.213
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 58.77 α = 90.00
b = 145.33 β = 90.00
c = 87.21 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-06-27
  • Released Date: 2016-09-28
  • Deposition author(s): Dovala, D.L., Hu, Q., Metzger IV, L.E.

Revision History

  • Version 1_0: 2016-09-28

    Type: Initial release

  • Version 1_1: 2016-10-05

    Type: Database references

  • Version 1_2: 2016-10-19

    Type: Database references

  • Version 1_3: 2016-10-26

    Type: Database references