A C69-family cysteine dipeptidase from Lactobacillus farciminis; substrate recognition mechanism and autoproteolytic mechanism in enzyme maturation
Kono, R., Watanabe, K.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Dipeptidase | 469 | Companilactobacillus farciminis KCTC 3681 = DSM 20184 | Mutation(s): 1  Gene Names: FC68_GL001211 | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EDO Query on EDO | H [auth A], I [auth A], J [auth A], O [auth C], P [auth C] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
ACT Query on ACT | L [auth B] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M | |||
CO Query on CO | F [auth A] G [auth A] K [auth B] M [auth C] N [auth C] | COBALT (II) ION Co XLJKHNWPARRRJB-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 192.337 | α = 90 |
b = 137.088 | β = 100.75 |
c = 101.297 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
HKL-2000 | data processing |
HKL-2000 | data scaling |
MOLREP | phasing |