Download MendeleyCrystal structure of an UDP-forming alpha, alpha-terhalose-phosphate synthase from Burkholderia xenovorans
Mayclin, S.J., Dranow, D.M., Lorimer, D.D., Edwards, T.E.To be published.
5HXA
Crystal structure of an UDP-forming alpha, alpha-terhalose-phosphate synthase from Burkholderia xenovorans
- PDB DOI: https://doi.org/10.2210/pdb5HXA/pdb
- Classification: PROTEIN BINDING
- Organism(s): Paraburkholderia xenovorans LB400
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2016-01-29 Released: 2016-02-10
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.186
- R-Value Work: 0.157
- R-Value Observed: 0.158
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Alpha,alpha-trehalose-phosphate synthase (UDP-forming) | 483 | Paraburkholderia xenovorans LB400 | Mutation(s): 0 Gene Names: Bxe_A3374 EC: 2.4.1.15 |  | |
UniProt | |||||
Find proteins for Q142X8 (Paraburkholderia xenovorans (strain LB400)) Explore Q142X8 Go to UniProtKB: Q142X8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q142X8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | L [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | B [auth A] C [auth A] D [auth A] E [auth A] F [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| NA Query on NA | M [auth A], N [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.186
- R-Value Work: 0.157
- R-Value Observed: 0.158
- Space Group: P 64 2 2
- Diffraction Data: https://doi.org/10.18430/M35HXA
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 171.18 | α = 90 |
| b = 171.18 | β = 90 |
| c = 95.15 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XSCALE | data scaling |
| MOLREP | phasing |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2016-02-10 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2016-02-10
Type: Initial release - Version 1.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description
