Crystal structure of the human vitamin D receptor ligand binding domain complexed with (1R,2S,3R,5Z,7E,14beta,17alpha)-2-cyanopropoxy-9,10-secocholesta-5,7,10-triene-1,3,25-triol
Takimoto-Kamimura, M.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Vitamin D3 receptor | 255 | Homo sapiens | Mutation(s): 0  Gene Names: VDR, NR1I1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P11473 (Homo sapiens) Explore P11473  Go to UniProtKB:  P11473 | |||||
PHAROS:  P11473 GTEx:  ENSG00000111424  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P11473 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
2KB Query on 2KB | B [auth A] | 4-{[(1R,2S,3R,5Z,7E,14beta,17alpha)-1,3,25-trihydroxy-9,10-secocholesta-5,7,10-trien-2-yl]oxy}butanenitrile C31 H49 N O4 KQWXEWOYVIUCOD-IBOBMRDDSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 44.663 | α = 90 |
b = 51.842 | β = 90 |
c = 131.475 | γ = 90 |
Software Name | Purpose |
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SCALA | data scaling |
MOLREP | phasing |
REFMAC | refinement |
PDB_EXTRACT | data extraction |