5GPG

Co-crystal structure of the FK506 binding domain of human FKBP25, Rapamycin and the FRB domain of human mTOR


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.67 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.174

Literature

Macromolecules
Sequence Display for 5GPG

Classification: ISOMERASE / TRANSFERASE

Total Structure Weight: 25314.00

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidyl-prolyl cis-trans isomerase FKBP3 A 117 Homo sapiens EC#: 5.2.1.8 IUBMB
Fragment: UNP residues 109-224
Gene Name(s): FKBP3 Gene View FKBP25
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Serine/threonine-protein kinase mTOR B 93 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: UNP residues 2021-2112
Gene Name(s): MTOR Gene View FRAP FRAP1 FRAP2 RAFT1 RAPT1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RAP
Query on RAP

A RAPAMYCIN IMMUNOSUPPRESSANT DRUG
C51 H79 N O13
QFJCIRLUMZQUOT-HPLJOQBZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CAS
Query on CAS
B L-PEPTIDE LINKING C5 H12 As N O2 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.67 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.174
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 46.04 α = 90.00
b = 58.35 β = 90.00
c = 86.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-08-02
  • Released Date: 2016-10-12
  • Deposition author(s): Lee, H.B., Lee, S.Y., Rhee, H.W., Lee, C.W.

Revision History

  • Version 1_0: 2016-10-12

    Type: Initial release