Refinement of Cryo-EM Structures Using Scattering Factors of Charged Atoms
Yonekura, K., Maki-Yonekura, M.(2016) J Appl Crystallogr 49: 1517-1523
Experimental Data Snapshot
Starting Model: experimental
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(2016) J Appl Crystallogr 49: 1517-1523
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Catalase | 527 | Bos taurus | Mutation(s): 0  EC: 1.11.1.6 | ||
UniProt | |||||
Find proteins for P00432 (Bos taurus) Explore P00432  Go to UniProtKB:  P00432 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00432 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NDP Query on NDP | F [auth A], H [auth B], J [auth C], L [auth D] | NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C21 H30 N7 O17 P3 ACFIXJIJDZMPPO-NNYOXOHSSA-N | |||
HEM Query on HEM | E [auth A], G [auth B], I [auth C], K [auth D] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 69 | α = 90 |
b = 173.5 | β = 90 |
c = 206 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
EDINT | data scaling |
Modified version of phenix | phasing |
Modified | phasing |
Funding Organization | Location | Grant Number |
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Japan | -- |